RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 KCNH6Q9H252 994 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 SLC9A2Q9UBY0 812 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 PADI3Q9ULW8 664 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 PCDHA6Q9UN73 950 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 PCDHA8Q9Y5H6 950 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 UBIAD1Q9Y5Z9 338 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 TRIOO75962 3097 aa17.19■□□□□ 0.34
SYNE2-228ENST00000639659 PLXNA4Q9HCM2 1894 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 RRN3P2A6NIE6 340 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 GNAQP50148 359 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 EDAQ92838 391 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 PBXIP1Q96AQ6 731 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 PGBD1Q96JS3 809 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 PPP1R16BQ96T49 567 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 PCYT2Q99447 389 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 PHOX2BQ99453 314 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 SDF4Q9BRK5 362 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 JADE2Q9NQC1 790 aa17.18■□□□□ 0.34
SYNE2-228ENST00000639659 RBM8AQ9Y5S9 174 aaKnown RBP17.18■□□□□ 0.34
SYNE2-228ENST00000639659 ZNF318Q5VUA4 2279 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 TMEM221A6NGB7 291 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 M0R296 226 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 DDX39AO00148 427 aaKnown RBP17.17■□□□□ 0.34
SYNE2-228ENST00000639659 PER2O15055 1255 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 TECTAO75443 2155 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 PLCB4Q15147 1175 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 SUGP1Q8IWZ8 645 aaKnown RBP17.17■□□□□ 0.34
SYNE2-228ENST00000639659 EFHBQ8N7U6 833 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 MSLNLQ96KJ4 702 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 RPGRIP1Q96KN7 1286 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 CELF4Q9BZC1 486 aaKnown RBP17.17■□□□□ 0.34
SYNE2-228ENST00000639659 TLE6Q9H808 572 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 CLEC1BQ9P126 229 aa17.17■□□□□ 0.34
SYNE2-228ENST00000639659 USP15Q9Y4E8 981 aaPredicted RBP17.17■□□□□ 0.34
SYNE2-228ENST00000639659 TBKBP1A7MCY6 615 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 RPLP2P05387 115 aaKnown RBP17.16■□□□□ 0.34
SYNE2-228ENST00000639659 ACTR2P61160 394 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 RBM10P98175 930 aaKnown RBP17.16■□□□□ 0.34
SYNE2-228ENST00000639659 KRT76Q01546 638 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 NAALADL2Q58DX5 795 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 TRIM67Q6ZTA4 783 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 SMRP1Q8NCR6 262 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 PRSS33Q8NF86 280 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 TNPO1Q92973 898 aaKnown RBP17.16■□□□□ 0.34
SYNE2-228ENST00000639659 MAP3K14Q99558 947 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 LRRC2Q9BYS8 371 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 PCDHB7Q9Y5E2 793 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 IGSF9BQ9UPX0 1349 aa17.16■□□□□ 0.34
SYNE2-228ENST00000639659 DENND3A2RUS2 1198 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 SH2B2O14492 632 aaPredicted RBP17.15■□□□□ 0.34
SYNE2-228ENST00000639659 BACH1O14867 736 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 SGSM2O43147 1006 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 EYA4O95677 639 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 GLP2RO95838 553 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 SP100P23497 879 aaPredicted RBP17.15■□□□□ 0.34
SYNE2-228ENST00000639659 MCM5P33992 734 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 STAT5BP51692 787 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 IER5LQ5T953 404 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 MICU3Q86XE3 530 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 THNSL1Q8IYQ7 743 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 CYP2W1Q8TAV3 490 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 MXRA8Q9BRK3 442 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 APOL5Q9BWW9 433 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 TMX1Q9H3N1 280 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 KCNH7Q9NS40 1196 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 HCSTQ9UBK5 93 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 PCDHB12Q9Y5F1 795 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 PCDHA2Q9Y5H9 948 aa17.15■□□□□ 0.34
SYNE2-228ENST00000639659 ARP10275 920 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 SMARCA1P28370 1054 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 SARSP49591 514 aaKnown RBP17.14■□□□□ 0.33
SYNE2-228ENST00000639659 NAPAP54920 295 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 MTHFD1LQ6UB35 978 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 TRMT1LQ7Z2T5 733 aaKnown RBP17.14■□□□□ 0.33
SYNE2-228ENST00000639659 TLR9Q9NR96 1032 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 AAASQ9NRG9 546 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 SLC12A7Q9Y666 1083 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 SQORQ9Y6N5 450 aa17.14■□□□□ 0.33
SYNE2-228ENST00000639659 MGEA5O60502 916 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 RPS6KA5O75582 802 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 CALM1P0DP23 149 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 CALM2P0DP24 149 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 CALM3P0DP25 149 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 ZNF76P36508 570 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 ZXDAP98168 799 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 COASYQ13057 564 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 PLPP4Q5VZY2 271 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 ZBTB33Q86T24 672 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 MAP4K1Q92918 833 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 TMEM87BQ96K49 555 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 ADAM2Q99965 735 aa17.13■□□□□ 0.33
SYNE2-228ENST00000639659 NOC2LQ9Y3T9 749 aaKnown RBP17.13■□□□□ 0.33
SYNE2-228ENST00000639659 FNDC1Q4ZHG4 1894 aaPredicted RBP17.12■□□□□ 0.33
SYNE2-228ENST00000639659 SMIM35A0A1B0GVV1 85 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 LOC730098B7Z3J9 87 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 MAFGO15525 162 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 FGF18O76093 207 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 KLRC1P26715 233 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 PTPN5P54829 565 aa17.12■□□□□ 0.33
SYNE2-228ENST00000639659 APOBRQ0VD83 1088 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms