RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CASQ1P31415 396 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 GCLCP48506 637 aaPredicted RBP20.31■□□□□ 0.84
CLN3-263ENST00000637871 ZBED6P86452 979 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 CAP1Q01518 475 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 PPP2R5CQ13362 524 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 HSP90AA2PQ14568 343 aaPredicted RBP20.31■□□□□ 0.84
CLN3-263ENST00000637871 VWA3BQ502W6 1294 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 NCAPH2Q6IBW4 605 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 POTEBQ6S5H4 581 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 TOGARAM2Q6ZUX3 1019 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 VAV3Q9UKW4 847 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 CTDP1Q9Y5B0 961 aaPredicted RBP20.31■□□□□ 0.84
CLN3-263ENST00000637871 E9PMD0 336 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 EYA4O95677 639 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 EDRF1Q3B7T1 1238 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 ZNF662Q6ZS27 426 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 CCDC170Q8IYT3 715 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 NEK9Q8TD19 979 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 SLC5A5Q92911 643 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 CFHR5Q9BXR6 569 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 MAF1Q9H063 256 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 PORCNQ9H237 461 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 HOMER2Q9NSB8 354 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 RIPK3Q9Y572 518 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 TTC26A0AVF1 554 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 SOWAHDA6NJG2 315 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 B4DLN1 442 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 KIF5CO60282 957 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 SSBP05455 408 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-263ENST00000637871 SPATA31C1P0DKV0 1188 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 GAP43P17677 238 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 HOXA13P31271 388 aaPredicted RBP20.3■□□□□ 0.84
CLN3-263ENST00000637871 HSD17B4P51659 736 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 MARSP56192 900 aaKnown RBP20.3■□□□□ 0.84
CLN3-263ENST00000637871 MEA1Q16626 185 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 FAM110CQ1W6H9 321 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 ZCWPW2Q504Y3 356 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 CEP55Q53EZ4 464 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 HERC4Q5GLZ8 1057 aaPredicted RBP20.3■□□□□ 0.84
CLN3-263ENST00000637871 SNRNP48Q6IEG0 339 aaKnown RBP20.3■□□□□ 0.84
CLN3-263ENST00000637871 RAD9BQ6WBX8 426 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 GPRC5AQ8NFJ5 357 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 MOV10L1Q9BXT6 1211 aaKnown RBP20.3■□□□□ 0.84
CLN3-263ENST00000637871 ARHGAP39Q9C0H5 1083 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 SPATC1LQ9H0A9 340 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 KCND2Q9NZV8 630 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 MORF4L1Q9UBU8 362 aa20.3■□□□□ 0.84
CLN3-263ENST00000637871 GPR25O00155 361 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 TRIM21P19474 475 aaKnown RBP20.29■□□□□ 0.84
CLN3-263ENST00000637871 CTGFP29279 349 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 GNG11P61952 73 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 TUBB4BP68371 445 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 KRT83P78385 493 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 PPP2R3AQ06190 1150 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 MIIPQ5JXC2 388 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 RIT2Q99578 217 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 TTYH3Q9C0H2 523 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 NDST4Q9H3R1 872 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 EFCC1Q9HA90 598 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 FAM184BQ9ULE4 1060 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 PCDHA2Q9Y5H9 948 aa20.29■□□□□ 0.84
CLN3-263ENST00000637871 MEIS1O00470 390 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 PSMD10O75832 226 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 CYLC1P35663 651 aaPredicted RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 LRRC55Q6ZSA7 311 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 OTOP1Q7RTM1 612 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 ZC3H3Q8IXZ2 948 aaKnown RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 PDCL2Q8N4E4 241 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 GTF3C2Q8WUA4 911 aaPredicted RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 EIF2AK1Q9BQI3 630 aaKnown RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 NUCKS1Q9H1E3 243 aaKnown RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 CGNQ9P2M7 1197 aaKnown RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 CCPG1Q9ULG6 757 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 COL4A3BPQ9Y5P4 624 aa20.28■□□□□ 0.84
CLN3-263ENST00000637871 EPN1Q9Y6I3 576 aaPredicted RBP20.28■□□□□ 0.84
CLN3-263ENST00000637871 MGAMO43451 1857 aa20.27■□□□□ 0.84
CLN3-263ENST00000637871 STAT3P40763 770 aa20.27■□□□□ 0.84
CLN3-263ENST00000637871 WDR78Q5VTH9 848 aa20.27■□□□□ 0.84
CLN3-263ENST00000637871 LRCH2Q5VUJ6 765 aa20.27■□□□□ 0.84
CLN3-263ENST00000637871 ZNF296Q8WUU4 475 aaPredicted RBP20.27■□□□□ 0.84
CLN3-263ENST00000637871 HSD17B14Q9BPX1 270 aa20.27■□□□□ 0.84
CLN3-263ENST00000637871 TEX13BQ9BXU2 312 aa20.27■□□□□ 0.84
CLN3-263ENST00000637871 IPO7O95373 1038 aaKnown RBP20.27■□□□□ 0.83
CLN3-263ENST00000637871 ALAS1P13196 640 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 HNRNPH3P31942 346 aaKnown RBP20.27■□□□□ 0.83
CLN3-263ENST00000637871 GIT2Q14161 759 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 EPHA7Q15375 998 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 ARHGAP29Q52LW3 1261 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 NCAPG2Q86XI2 1143 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 CD99L2Q8TCZ2 262 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 SEL1LQ9UBV2 794 aa20.27■□□□□ 0.83
CLN3-263ENST00000637871 PLXNB2O15031 1838 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 POTEFA5A3E0 1075 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 HSPA8P11142 646 aaKnown RBP20.26■□□□□ 0.83
CLN3-263ENST00000637871 ERCC3P19447 782 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 RBM10P98175 930 aaKnown RBP20.26■□□□□ 0.83
CLN3-263ENST00000637871 SP3Q02447 781 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 NCBP1Q09161 790 aaKnown RBP20.26■□□□□ 0.83
CLN3-263ENST00000637871 ARSHQ5FYA8 562 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 POTEGQ6S5H5 508 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms