RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 CEP95Q96GE4 821 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 YIPF4Q9BSR8 244 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 BDH2Q9BUT1 245 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 DUSP15Q9H1R2 295 aaPredicted RBP3.46□□□□□ -1.86
VIM-210ENST00000637053 RPAP3Q9H6T3 665 aaPredicted RBP3.46□□□□□ -1.86
VIM-210ENST00000637053 CYP4F11Q9HBI6 524 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 CBX8Q9HC52 389 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 COPRSQ9NQ92 184 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 ATP8A2Q9NTI2 1148 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 PCSK1NQ9UHG2 260 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 STRIP2Q9ULQ0 834 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 PHTF1Q9UMS5 762 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 TRAK1Q9UPV9 953 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 ITM2BQ9Y287 266 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 EFR3BQ9Y2G0 817 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 CEP83Q9Y592 693 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 SNCAIPQ9Y6H5 919 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 GPRASP1Q5JY77 1395 aa3.46□□□□□ -1.86
VIM-210ENST00000637053 ABHD14A-ACY1A0A1B0GW23 586 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 KLHL33A6NCF5 533 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 SYNDIG1LA6NDD5 238 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 NOTOA8MTQ0 251 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 F5H423 210 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 STXBP3O00186 592 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 EIF1AYO14602 144 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 IRS4O14654 1257 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 PDE8AO60658 829 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 PAGE1O75459 146 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 SKAP2O75563 359 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 GFPT2O94808 682 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 KIAA0754O94854 1291 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 ABLIM3O94929 683 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 MBD4O95243 580 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 BAG2O95816 211 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 IFIT1P09914 478 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 MTHFD1P11586 935 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 SMARCA1P28370 1054 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 HOXD12P35452 270 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 ECE1P42892 770 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 MAPK9P45984 424 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 TPD52P55327 224 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 GJA9P57773 515 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 GABREP78334 506 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 ZXDAP98168 799 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 MECOMQ03112 1051 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 CCDC15Q0P6D6 951 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 INPP5AQ14642 412 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 MYBPC3Q14896 1274 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 RTP5Q14D33 572 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 PLCB4Q15147 1175 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 SAFBQ15424 915 aaKnown RBP eCLIP3.45□□□□□ -1.86
VIM-210ENST00000637053 NR0B2Q15466 257 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 TAF1CQ15572 869 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 SEPT7Q16181 437 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 GALNT17Q6IS24 598 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 IRGCQ6NXR0 463 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 CTR9Q6PD62 1173 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 PI16Q6UXB8 463 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 LDHAL6AQ6ZMR3 332 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 ERMP1Q7Z2K6 904 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 FAM26EQ8N5C1 309 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 TP53I13Q8NBR0 393 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 ZNF507Q8TCN5 953 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 POF1BQ8WVV4 589 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 NINJ1Q92982 152 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 JAKMIP2Q96AA8 810 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 GSDMAQ96QA5 445 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 LZTS2Q9BRK4 669 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 SPON2Q9BUD6 331 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 EMILIN2Q9BXX0 1053 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 RWDD1Q9H446 243 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 NCOA5Q9HCD5 579 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 ZCCHC17Q9NP64 241 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 NLRC4Q9NPP4 1024 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 SMC4Q9NTJ3 1288 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 ANKEF1Q9NU02 776 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 TBC1D22BQ9NU19 505 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 C6orf203Q9P0P8 240 aaPredicted RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 CPSF2Q9P2I0 782 aaKnown RBP3.45□□□□□ -1.86
VIM-210ENST00000637053 DMTF1Q9Y222 760 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 FAM50BQ9Y247 325 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 IRAK3Q9Y616 596 aa3.45□□□□□ -1.86
VIM-210ENST00000637053 IL16Q14005 1332 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 ITIH6Q6UXX5 1313 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 PIK3R4Q99570 1358 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 A0A1B0GVC2 190 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 ZC3H12DA2A288 527 aaKnown RBP3.44□□□□□ -1.86
VIM-210ENST00000637053 FITM1A5D6W6 292 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 TSPY2A6NKD2 308 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 RTCAO00442 366 aaKnown RBP3.44□□□□□ -1.86
VIM-210ENST00000637053 PMM2O15305 246 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 CD4P01730 458 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 TPM3P06753 285 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 TSPY3P0CV98 308 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 TSPY8P0CW00 308 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 ZSCAN20P17040 1043 aaPredicted RBP3.44□□□□□ -1.86
VIM-210ENST00000637053 RPS6KB1P23443 525 aa3.44□□□□□ -1.86
VIM-210ENST00000637053 EIF4BP23588 611 aaKnown RBP3.44□□□□□ -1.86
VIM-210ENST00000637053 TPP2P29144 1249 aaPredicted RBP3.44□□□□□ -1.86
VIM-210ENST00000637053 PRPHP41219 470 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms