RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 FAM43AQ8N2R8 423 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 TRIM47Q96LD4 638 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 DRC1Q96MC2 740 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 CCDC43Q96MW1 224 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 PURBQ96QR8 312 aaKnown RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 TSG101Q99816 390 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 PARVGQ9HBI0 331 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 VTA1Q9NP79 307 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.73□□□□□ -0.53
CLN3-248ENST00000636355 PCDHA2Q9Y5H9 948 aa11.73□□□□□ -0.53
CLN3-248ENST00000636355 THSD7BQ9C0I4 1608 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 SYNGAP1Q96PV0 1343 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 A0A1B0GTH6 734 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 LRRC10BA6NIK2 292 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 SLC15A5A6NIM6 579 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 DDX39AO00148 427 aaKnown RBP11.72□□□□□ -0.53
CLN3-248ENST00000636355 ATP9AO75110 1047 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 SUPT20HL2P0C7V6 817 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 YWHABP31946 246 aaKnown RBP11.72□□□□□ -0.53
CLN3-248ENST00000636355 RARRES1P49788 294 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 UBASH3AP57075 661 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 ACTR2P61160 394 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 PSMC6P62333 389 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 FSTL1Q12841 308 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 EDRF1Q3B7T1 1238 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 FILIP1LQ4L180 1135 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 ZCWPW2Q504Y3 356 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 MAMDC4Q6UXC1 1216 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 OTUD6AQ7L8S5 288 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 REM2Q8IYK8 340 aaPredicted RBP11.72□□□□□ -0.53
CLN3-248ENST00000636355 ANKRD13CQ8N6S4 541 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 CCDC150Q8NCX0 1101 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 BANK1Q8NDB2 785 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 SCFD2Q8WU76 684 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 FAM167AQ96KS9 214 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 RUSC1Q9BVN2 902 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 PORCNQ9H237 461 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 C17orf75Q9HAS0 396 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 IFNKQ9P0W0 207 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 WRAP73Q9P2S5 460 aaPredicted RBP11.72□□□□□ -0.53
CLN3-248ENST00000636355 LIMA1Q9UHB6 759 aaKnown RBP11.72□□□□□ -0.53
CLN3-248ENST00000636355 ZSWIM8A7E2V4 1837 aa11.72□□□□□ -0.53
CLN3-248ENST00000636355 ITIH6Q6UXX5 1313 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 EMSYQ7Z589 1322 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 IGKV6D-21A0A0A0MT36 114 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 FARP2O94887 1054 aaPredicted RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 FAM13AO94988 1023 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 GNA14O95837 355 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 TPM2P07951 284 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 ATP1A3P13637 1013 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 CDK11BP21127 795 aaKnown RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 ADORA2AP29274 412 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 SLC26A2P50443 739 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 RTP1P59025 263 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 NFIL3Q16649 462 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 Q3C1V9 767 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 ZNF792Q3KQV3 632 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 XKR3Q5GH77 459 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 HERC4Q5GLZ8 1057 aaPredicted RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 ABHD15Q6UXT9 468 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 EPM2AIP1Q7L775 607 aaPredicted RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 ZSCAN30Q86W11 494 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 ZC3H3Q8IXZ2 948 aaKnown RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 CSGALNACT2Q8N6G5 542 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 MCPH1Q8NEM0 835 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 GOLGA5Q8TBA6 731 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 AFAP1L1Q8TED9 768 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 KCNN1Q92952 543 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 HVCN1Q96D96 273 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 IQCDQ96DY2 449 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 CEP63Q96MT8 703 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 PTPN18Q99952 460 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 XPO4Q9C0E2 1151 aaKnown RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 ST6GALNAC4Q9H4F1 302 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 SLC39A2Q9NP94 309 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 PKD2L1Q9P0L9 805 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 LARSQ9P2J5 1176 aaKnown RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 MAGEC2Q9UBF1 373 aaPredicted RBP11.71□□□□□ -0.53
CLN3-248ENST00000636355 KCNG1Q9UIX4 513 aa11.71□□□□□ -0.53
CLN3-248ENST00000636355 NRDCO43847 1150 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 DGAT1O75907 488 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 ALDH1A1P00352 501 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 PRKCEQ02156 737 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 TRIM14Q14142 442 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 TTLL4Q14679 1199 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 TAF1CQ15572 869 aaPredicted RBP11.7□□□□□ -0.54
CLN3-248ENST00000636355 TCP11X2Q5H9J9 407 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 WDR78Q5VTH9 848 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 FAM160B1Q5W0V3 765 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 PADI6Q6TGC4 694 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 APTXQ7Z2E3 356 aaKnown RBP11.7□□□□□ -0.54
CLN3-248ENST00000636355 GPR142Q7Z601 462 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 PLEKHH3Q7Z736 793 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 SFR1Q86XK3 245 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 IFNL1Q8IU54 200 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 VSTM4Q8IW00 320 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 EXOC8Q8IYI6 725 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 PIGOQ8TEQ8 1089 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 TMEM174Q8WUU8 243 aa11.7□□□□□ -0.54
CLN3-248ENST00000636355 SOCS4Q8WXH5 440 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms