RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 LAMC2Q13753 1193 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 DUSP28Q4G0W2 176 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 TMEM63BQ5T3F8 832 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 BANK1Q8NDB2 785 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 SEPT1Q8WYJ6 367 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 STAMQ92783 540 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 ERCC4Q92889 916 aaPredicted RBP15.76■□□□□ 0.11
CLN3-242ENST00000635958 ERO1AQ96HE7 468 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 GSDMAQ96QA5 445 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 TRIM9Q9C026 710 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 SRRDQ9UH36 339 aa15.76■□□□□ 0.11
CLN3-242ENST00000635958 SMC2O95347 1197 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 CYP2C19P33261 490 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 ARHGAP1Q07960 439 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 CUL4BQ13620 913 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 CCDC144BQ3MJ40 725 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 CD99L2Q8TCZ2 262 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 GPR20Q99678 358 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 MAFBQ9Y5Q3 323 aaPredicted RBP15.75■□□□□ 0.11
CLN3-242ENST00000635958 CASP8AP2Q9UKL3 1982 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 GH1P01241 217 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 RBM10P98175 930 aaKnown RBP15.75■□□□□ 0.11
CLN3-242ENST00000635958 ARHGEF6Q15052 776 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 UGCGQ16739 394 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 SWSAP1Q6NVH7 229 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 ZNF296Q8WUU4 475 aaPredicted RBP15.75■□□□□ 0.11
CLN3-242ENST00000635958 COPS5Q92905 334 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 ATP6V0A1Q93050 837 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 SMARCE1Q969G3 411 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 DBR1Q9UK59 544 aaKnown RBP15.75■□□□□ 0.11
CLN3-242ENST00000635958 WDR81Q562E7 1941 aa15.75■□□□□ 0.11
CLN3-242ENST00000635958 MYMKA6NI61 221 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 STBD1O95210 358 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 SMPD1P17405 629 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 CASP1P29466 404 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 TYRO3Q06418 890 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 HSDL1Q3SXM5 330 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 PRAMEF19Q5SWL8 479 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 CCDC60Q8IWA6 550 aaPredicted RBP15.74■□□□□ 0.11
CLN3-242ENST00000635958 TRIML1Q8N9V2 468 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 AFAP1L1Q8TED9 768 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 PIGOQ8TEQ8 1089 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 TRIB2Q92519 343 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 SPATA33Q96N06 139 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 BLZF1Q9H2G9 400 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 ANKEF1Q9NU02 776 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 GABBR1Q9UBS5 961 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 ZHX1Q9UKY1 873 aaPredicted RBP15.74■□□□□ 0.11
CLN3-242ENST00000635958 IGSF9BQ9UPX0 1349 aa15.74■□□□□ 0.11
CLN3-242ENST00000635958 A0A087WWV3 80 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 ZNF862O60290 1169 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 SORBS3O60504 671 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 LGR5O75473 907 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 CYP11B2P19099 503 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 CDC25BP30305 580 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 SP4Q02446 784 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 TNFAIP2Q03169 654 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 SYCP1Q15431 976 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 MFSD14CQ5VZR4 134 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 PCYT2Q99447 389 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 BEGAINQ9BUH8 593 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 BHMT2Q9H2M3 363 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 GNEQ9Y223 722 aaKnown RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 PVALEFA0A1B0GWK0 134 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 ZBTB39O15060 712 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 KLRC4O43908 158 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 RPN1P04843 607 aaKnown RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 YWHABP31946 246 aaKnown RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 TCF7P36402 384 aaPredicted RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 CTCFP49711 727 aaPredicted RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 PRMT2P55345 433 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 NLRP12P59046 1061 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 MORC3Q14149 939 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 DHX8Q14562 1220 aaKnown RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 KCNB1Q14721 858 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 ARSHQ5FYA8 562 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 PPTC7Q8NI37 304 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 DNAJC19Q96DA6 116 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 CCDC94Q9BW85 323 aaPredicted RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 ZNF302Q9NR11 478 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 BMP2KQ9NSY1 1161 aaPredicted RBP15.73■□□□□ 0.11
CLN3-242ENST00000635958 KCND2Q9NZV8 630 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 MAN1B1Q9UKM7 699 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 Q9Y3F1 56 aa15.73■□□□□ 0.11
CLN3-242ENST00000635958 NOP56O00567 594 aaKnown RBP15.72■□□□□ 0.11
CLN3-242ENST00000635958 HOXD8P13378 290 aaPredicted RBP15.72■□□□□ 0.11
CLN3-242ENST00000635958 GJC2Q5T442 439 aaPredicted RBP15.72■□□□□ 0.11
CLN3-242ENST00000635958 PLPPR4Q7Z2D5 763 aa15.72■□□□□ 0.11
CLN3-242ENST00000635958 PXYLP1Q8TE99 480 aa15.72■□□□□ 0.11
CLN3-242ENST00000635958 DDX12PQ92771 950 aa15.72■□□□□ 0.11
CLN3-242ENST00000635958 ANO10Q9NW15 660 aa15.72■□□□□ 0.11
CLN3-242ENST00000635958 FAM184BQ9ULE4 1060 aa15.72■□□□□ 0.11
CLN3-242ENST00000635958 LOXHD1Q8IVV2 1947 aa15.72■□□□□ 0.11
CLN3-242ENST00000635958 MYH9P35579 1960 aaKnown RBP15.71■□□□□ 0.11
CLN3-242ENST00000635958 BACH1O14867 736 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 ADCY6O43306 1168 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 PPFIA4O75335 1185 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 CYBAP13498 195 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms