RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 C12orf65Q9H3J6 166 aaKnown RBP5.2□□□□□ -1.58
SCN1A-211ENST00000635893 GALNT8Q9NY28 637 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 TRAF6Q9Y4K3 522 aa5.2□□□□□ -1.58
SCN1A-211ENST00000635893 MATN2O00339 956 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 MAN2B1O00754 1011 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 NARSO43776 548 aaKnown RBP5.19□□□□□ -1.58
SCN1A-211ENST00000635893 HMGCRP04035 888 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 PTGS1P23219 599 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 MCM7P33993 719 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 IL13RA1P78552 427 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 PURAQ00577 322 aaKnown RBP5.19□□□□□ -1.58
SCN1A-211ENST00000635893 DUSP8Q13202 625 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 RAB33AQ14088 237 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 MTDHQ86UE4 582 aaKnown RBP5.19□□□□□ -1.58
SCN1A-211ENST00000635893 C1orf210Q8IVY1 113 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 SCUBE1Q8IWY4 988 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 AMER2Q8N7J2 671 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 INCENPQ9NQS7 918 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 CATSPERZQ9NTU4 200 aa5.19□□□□□ -1.58
SCN1A-211ENST00000635893 WDR33Q9C0J8 1336 aaKnown RBP5.19□□□□□ -1.58
SCN1A-211ENST00000635893 AMY2AP04746 511 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 PDE6AP16499 860 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 NAT1P18440 290 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 AMY2BP19961 511 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 AOAHP28039 575 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 KCNQ1P51787 676 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 EIF4HQ15056 248 aaKnown RBP5.18□□□□□ -1.58
SCN1A-211ENST00000635893 STILQ15468 1287 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 USP30Q70CQ3 517 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 LARP4Q71RC2 724 aaKnown RBP eCLIP5.18□□□□□ -1.58
SCN1A-211ENST00000635893 C16orf59Q7L2K0 433 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 OSTM1Q86WC4 334 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 PTRH1Q86Y79 214 aaKnown RBP5.18□□□□□ -1.58
SCN1A-211ENST00000635893 PCDH19Q8TAB3 1148 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 PTPRN2Q92932 1015 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 CHFRQ96EP1 664 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 WNK4Q96J92 1243 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 SPATA9Q9BWV2 254 aa5.18□□□□□ -1.58
SCN1A-211ENST00000635893 PUF60Q9UHX1 559 aaKnown RBP5.18□□□□□ -1.58
SCN1A-211ENST00000635893 GSTA4O15217 222 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 C4BPAP04003 597 aaKnown RBP5.17□□□□□ -1.58
SCN1A-211ENST00000635893 PYGMP11217 842 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 ACRV1P26436 265 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 ADCY8P40145 1251 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 HERVK_113P62684 666 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 DGCR2P98153 550 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 DPTQ07507 201 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 TBR1Q16650 682 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 ZNF808Q8N4W9 903 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-211ENST00000635893 IL17DQ8TAD2 202 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 CFHR4Q92496 578 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 PLEKHG4BQ96PX9 1271 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 BTBD2Q9BX70 525 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 TRIM55Q9BYV6 548 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 TRIM8Q9BZR9 551 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 KIAA1683Q9H0B3 1180 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 BTBD7Q9P203 1132 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 C11orf21Q9P2W6 132 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 PCDHA8Q9Y5H6 950 aa5.17□□□□□ -1.58
SCN1A-211ENST00000635893 PRAMEF25A6NGN4 478 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 ZNF561-AS1K7EIQ3 104 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 ARVCFO00192 962 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 C1SP09871 688 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 KRT15P19012 456 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 JAM2P57087 298 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 SUMO1P63165 101 aaKnown RBP5.16□□□□□ -1.58
SCN1A-211ENST00000635893 ST5P78524 1137 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 GUCY1A3Q02108 690 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 CRY1Q16526 586 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 SMN1Q16637 294 aaKnown RBP5.16□□□□□ -1.58
SCN1A-211ENST00000635893 FAM47CQ5HY64 1035 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 TRIM68Q6AZZ1 485 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 OTOP2Q7RTS6 562 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 WDR48Q8TAF3 677 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 CACTINQ8WUQ7 758 aaKnown RBP5.16□□□□□ -1.58
SCN1A-211ENST00000635893 IPO9Q96P70 1041 aaKnown RBP5.16□□□□□ -1.58
SCN1A-211ENST00000635893 CEP89Q96ST8 783 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 CDC6Q99741 560 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 NELFAQ9H3P2 528 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 CBLCQ9ULV8 474 aa5.16□□□□□ -1.58
SCN1A-211ENST00000635893 TRBV23-1A0A0A0MS06 115 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 ADCY3O60266 1144 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 CLASP2O75122 1294 aaKnown RBP5.15□□□□□ -1.59
SCN1A-211ENST00000635893 HIBADHP31937 336 aaKnown RBP5.15□□□□□ -1.59
SCN1A-211ENST00000635893 MC4RP32245 332 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 MSX2P35548 267 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-211ENST00000635893 ECE1P42892 770 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 MEOX1P50221 254 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 INHBEP58166 350 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 FOXL1Q12952 345 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 PCOLCEQ15113 449 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 SPATC1Q76KD6 591 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 OR10A2Q9H208 303 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 AURKAIP1Q9NWT8 199 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-211ENST00000635893 PLA2G3Q9NZ20 509 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 CDC42EP3Q9UKI2 254 aa5.15□□□□□ -1.59
SCN1A-211ENST00000635893 A0A0G2JNJ9 132 aa5.14□□□□□ -1.59
SCN1A-211ENST00000635893 PDPK1O15530 556 aa5.14□□□□□ -1.59
SCN1A-211ENST00000635893 MPIG6BO95866 241 aa5.14□□□□□ -1.59
SCN1A-211ENST00000635893 C6orf222P0C671 652 aaPredicted RBP5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms