RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 MYCLP12524 364 aaPredicted RBP24.33■■□□□ 1.49
PNKP-220ENST00000627232 NR2F2P24468 414 aa24.33■■□□□ 1.49
PNKP-220ENST00000627232 RPL13P26373 211 aaKnown RBP24.33■■□□□ 1.49
PNKP-220ENST00000627232 CCND2P30279 289 aa24.33■■□□□ 1.49
PNKP-220ENST00000627232 MAP3K9P80192 1104 aa24.33■■□□□ 1.49
PNKP-220ENST00000627232 MTERF4Q7Z6M4 381 aaKnown RBP24.33■■□□□ 1.49
PNKP-220ENST00000627232 MYCT1Q8N699 235 aa24.33■■□□□ 1.49
PNKP-220ENST00000627232 FHDC1Q9C0D6 1143 aaPredicted RBP24.33■■□□□ 1.49
PNKP-220ENST00000627232 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.33■■□□□ 1.49
PNKP-220ENST00000627232 ZBTB39O15060 712 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 MAFGO15525 162 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 KIF5CO60282 957 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 DDNO94850 711 aaPredicted RBP24.32■■□□□ 1.48
PNKP-220ENST00000627232 CYLC1P35663 651 aaPredicted RBP24.32■■□□□ 1.48
PNKP-220ENST00000627232 TSC1Q92574 1164 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 DCPSQ96C86 337 aaKnown RBP24.32■■□□□ 1.48
PNKP-220ENST00000627232 GPRASP2Q96D09 838 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 TEX13BQ9BXU2 312 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 MYO1AQ9UBC5 1043 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 SNCAIPQ9Y6H5 919 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 OTOFQ9HC10 1997 aa24.32■■□□□ 1.48
PNKP-220ENST00000627232 FANCGO15287 622 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 SLC16A3O15427 465 aaKnown RBP24.31■■□□□ 1.48
PNKP-220ENST00000627232 SFNP31947 248 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 JAK3P52333 1124 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 KRT83P78385 493 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 TMEM132BQ14DG7 1078 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 ARHGAP29Q52LW3 1261 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 ZNF662Q6ZS27 426 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 VSIG10LQ86VR7 867 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 RDM1Q8NG50 284 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 NEK11Q8NG66 645 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 ANKRD7Q92527 254 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 WDR24Q96S15 920 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 MMRN2Q9H8L6 949 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 LZTFL1Q9NQ48 299 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 PKD2L1Q9P0L9 805 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 ZNF215Q9UL58 517 aaPredicted RBP24.31■■□□□ 1.48
PNKP-220ENST00000627232 PLAGL2Q9UPG8 496 aa24.31■■□□□ 1.48
PNKP-220ENST00000627232 ASTN1O14525 1302 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 QARSP47897 775 aaKnown RBP24.3■■□□□ 1.48
PNKP-220ENST00000627232 KRT76Q01546 638 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 KCNMA1Q12791 1236 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.3■■□□□ 1.48
PNKP-220ENST00000627232 NLRX1Q86UT6 975 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 MAP7D2Q96T17 732 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 ACAD9Q9H845 621 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 METTL14Q9HCE5 456 aaKnown RBP24.3■■□□□ 1.48
PNKP-220ENST00000627232 SPDYE16A6NNV3 312 aaPredicted RBP24.3■■□□□ 1.48
PNKP-220ENST00000627232 PADI6Q6TGC4 694 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 ZNF710Q8N1W2 664 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 NSUN6Q8TEA1 469 aaKnown RBP24.3■■□□□ 1.48
PNKP-220ENST00000627232 FIZ1Q96SL8 496 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 NUCKS1Q9H1E3 243 aaKnown RBP24.3■■□□□ 1.48
PNKP-220ENST00000627232 RNF181Q9P0P0 153 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 TCEAL9Q9UHQ7 104 aa24.3■■□□□ 1.48
PNKP-220ENST00000627232 A0A0G2JMZ2 1700 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 KIAA1217Q5T5P2 1943 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 SFI1A8K8P3 1242 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 EIF3CLB5ME19 914 aaKnown RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 URI1O94763 535 aaPredicted RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 NR3C1P04150 777 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 NR3C2P08235 984 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 ARHGAP25P42331 645 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 NCBP1Q09161 790 aaKnown RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 VGLL4Q14135 290 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 ZNF720Q7Z2F6 126 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 SULF1Q8IWU6 871 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 C4orf19Q8IY42 314 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 EIF3CQ99613 913 aaKnown RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 SENP7Q9BQF6 1050 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 TIPINQ9BVW5 301 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 NHEJ1Q9H9Q4 299 aaPredicted RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 FAM207AQ9NSI2 230 aaPredicted RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 ARMCX3Q9UH62 379 aaPredicted RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 REXO2Q9Y3B8 237 aaKnown RBP24.29■■□□□ 1.48
PNKP-220ENST00000627232 SAMM50Q9Y512 469 aa24.29■■□□□ 1.48
PNKP-220ENST00000627232 WDR64B1ANS9 1081 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 STAM2O75886 525 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 MAPTP10636 758 aaKnown RBP24.28■■□□□ 1.48
PNKP-220ENST00000627232 NMT1P30419 496 aaKnown RBP24.28■■□□□ 1.48
PNKP-220ENST00000627232 RBM10P98175 930 aaKnown RBP24.28■■□□□ 1.48
PNKP-220ENST00000627232 MAPK7Q13164 816 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 FAM178BQ8IXR5 827 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 INPP4AQ96PE3 977 aaPredicted RBP24.28■■□□□ 1.48
PNKP-220ENST00000627232 HAUS4Q9H6D7 363 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 CEP72Q9P209 647 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 PCDHB13Q9Y5F0 798 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 WDR81Q562E7 1941 aa24.28■■□□□ 1.48
PNKP-220ENST00000627232 ZMYM2Q9UBW7 1377 aa24.27■■□□□ 1.48
PNKP-220ENST00000627232 TESPA1A2RU30 521 aaPredicted RBP24.27■■□□□ 1.48
PNKP-220ENST00000627232 EPHB6O15197 1021 aa24.27■■□□□ 1.48
PNKP-220ENST00000627232 TGFB1I1O43294 461 aa24.27■■□□□ 1.48
PNKP-220ENST00000627232 PPP1R12BO60237 982 aaPredicted RBP24.27■■□□□ 1.48
PNKP-220ENST00000627232 EPB41P11171 864 aaKnown RBP24.27■■□□□ 1.48
PNKP-220ENST00000627232 PSMC5P62195 406 aa24.27■■□□□ 1.48
PNKP-220ENST00000627232 ALCAMQ13740 583 aa24.27■■□□□ 1.48
PNKP-220ENST00000627232 ZNF746Q6NUN9 644 aaPredicted RBP24.27■■□□□ 1.48
PNKP-220ENST00000627232 PDXDC1Q6P996 788 aa24.27■■□□□ 1.48
PNKP-220ENST00000627232 SMCR8Q8TEV9 937 aaPredicted RBP24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms