RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 KRT40Q6A162 431 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 ASAP3Q8TDY4 903 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 AGBL1Q96MI9 1066 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 CENPKQ9BS16 269 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 RETREG1Q9H6L5 497 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 TLR7Q9NYK1 1049 aaKnown RBP8.58□□□□□ -1.04
VPS11-209ENST00000622309 SART1O43290 800 aaKnown RBP8.58□□□□□ -1.04
VPS11-209ENST00000622309 ZPR1O75312 459 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 MYL6BP14649 208 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 RNASE9P60153 205 aaKnown RBP8.58□□□□□ -1.04
VPS11-209ENST00000622309 RASSF7Q02833 373 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 CUL1Q13616 776 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 GALNTL6Q49A17 601 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 RRAGBQ5VZM2 374 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 PPP4R3CPQ6ZMV5 832 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 MB21D1Q8N884 522 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 PRMT1Q99873 361 aaKnown RBP8.58□□□□□ -1.04
VPS11-209ENST00000622309 ISCUQ9H1K1 167 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 THAP9Q9H5L6 903 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 SH2D4AQ9H788 454 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 STOML1Q9UBI4 398 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 GJA3Q9Y6H8 435 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 LTN1O94822 1766 aa8.58□□□□□ -1.04
VPS11-209ENST00000622309 RGPD2P0DJD1 1756 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 RNMTO43148 476 aaKnown RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 TIMM44O43615 452 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 SNX3O60493 162 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 GNA14O95837 355 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 KCNA2P16389 499 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 CCNFP41002 786 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 DHX9Q08211 1270 aaKnown RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 LSAMPQ13449 338 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 BTG3Q14201 252 aaPredicted RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 R3HDM1Q15032 1099 aaKnown RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 UAP1Q16222 522 aaPredicted RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 CCDC152Q4G0S7 254 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 NANOGNBQ7Z5D8 188 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 MAP7D3Q8IWC1 876 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 KLHDC4Q8TBB5 520 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 FERMT2Q96AC1 680 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 DHRS1Q96LJ7 313 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 NR1H4Q96RI1 486 aaPredicted RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 SPATA16Q9BXB7 569 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 LUC7LQ9NQ29 371 aaKnown RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 SEC31BQ9NQW1 1179 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 NDUFB9Q9Y6M9 179 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 TNS3Q68CZ2 1445 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 RFX7Q2KHR2 1363 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 MAP3K15Q6ZN16 1313 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 RAD51CO43502 376 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 PEX11AO75192 247 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 TJP3O95049 919 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 TROVE2P10155 538 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS11-209ENST00000622309 AKAP4Q5JQC9 854 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 ALKBH2Q6NS38 261 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 EXOC3L1Q86VI1 746 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 ATP8B4Q8TF62 1192 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 LENG1Q96BZ8 264 aaPredicted RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 AIFM3Q96NN9 605 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 CATSPER2Q96P56 530 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 UBAC1Q9BSL1 405 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 GPHNQ9NQX3 736 aaPredicted RBP8.57□□□□□ -1.04
VPS11-209ENST00000622309 AASDHPPTQ9NRN7 309 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 ATP8A2Q9NTI2 1148 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 ITGB1BP2Q9UKP3 347 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 PNMA3Q9UL41 463 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 ATP8A1Q9Y2Q0 1164 aa8.57□□□□□ -1.04
VPS11-209ENST00000622309 TLDC2A0PJX2 215 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 TRIM43BA6NCK2 446 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 PPP1R3GB7ZBB8 358 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 ACTN4O43707 911 aaKnown RBP8.56□□□□□ -1.04
VPS11-209ENST00000622309 VHLP40337 213 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 OXCT1P55809 520 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 PLS1Q14651 629 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 SAFBQ15424 915 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS11-209ENST00000622309 MEA1Q16626 185 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 KRT26Q7Z3Y9 468 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 PPFIBP2Q8ND30 876 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 STKLD1Q8NE28 680 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 LRRC8CQ8TDW0 803 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 RAPGEF4Q8WZA2 1011 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 FAM136AQ96C01 138 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 CLIP3Q96DZ5 547 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 GSDMAQ96QA5 445 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 TXLNGQ9NUQ3 528 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 ETNK2Q9NVF9 386 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 ZNF711Q9Y462 761 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 PCDHA13Q9Y5I0 950 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 COL15A1P39059 1388 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 LMNAP02545 664 aaKnown RBP8.56□□□□□ -1.04
VPS11-209ENST00000622309 EIF3BP55884 814 aaKnown RBP8.56□□□□□ -1.04
VPS11-209ENST00000622309 PHEXP78562 749 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 PAK1Q13153 545 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 GRAMD4Q6IC98 578 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 ASRGL1Q7L266 308 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 DZIP1Q86YF9 867 aaKnown RBP8.56□□□□□ -1.04
VPS11-209ENST00000622309 STAG2Q8N3U4 1231 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 SPATA20Q8TB22 786 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 NOX5Q96PH1 765 aa8.56□□□□□ -1.04
VPS11-209ENST00000622309 OXCT2Q9BYC2 517 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms