RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 E4F1Q66K89 784 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 CATSPERGQ6ZRH7 1159 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 KMT5AQ9NQR1 393 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 DLATP10515 647 aaKnown RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 ZNF157P51786 506 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 GBP3Q9H0R5 595 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 KCNMB3Q9NPA1 279 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 ANKFY1Q9P2R3 1169 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 PUF60Q9UHX1 559 aaKnown RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 POTEJP0CG39 1038 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 LRRC15Q8TF66 581 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 SPATC1LQ9H0A9 340 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 SPDYE16A6NNV3 312 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 GAP43P17677 238 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 FXR1P51114 621 aaKnown RBP eCLIP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 JAK3P52333 1124 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 MOXD1Q6UVY6 613 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 OTOP1Q7RTM1 612 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 ACRBPQ8NEB7 543 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 GGPS1O95749 300 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 PSMC5P62195 406 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 CYP26C1Q6V0L0 522 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 TAF1DQ9H5J8 278 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 GBA2Q9HCG7 927 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 GPRC5CQ9NQ84 441 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 RNF216Q9NWF9 866 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 SYNPO2Q9UMS6 1093 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 KIF2AO00139 706 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 ZNF18P17022 549 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 CLK2P49760 499 aaKnown RBP17.28■□□□□ 0.36
CPSF1-213ENST00000620219 LRRC63Q05C16 580 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 MAN2A1Q16706 1144 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 SPTLC3Q9NUV7 552 aa17.28■□□□□ 0.36
CPSF1-213ENST00000620219 CNGA1P29973 690 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 KLK7P49862 253 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 VPS36Q86VN1 386 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 FAM186BQ8IYM0 893 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 MB21D1Q8N884 522 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 POMGNT1Q8WZA1 660 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 RIT2Q99578 217 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 TUFT1Q9NNX1 390 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 A0A1B0GTH6 734 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 NR1I3Q14994 352 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 CCDC122Q5T0U0 273 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 ELOA2Q8IYF1 753 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-213ENST00000620219 KIAA0895Q8NCT3 520 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.27■□□□□ 0.366e-8■□□□□ 8.9
CPSF1-213ENST00000620219 FNBP1Q96RU3 617 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 IRX2Q9BZI1 471 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-213ENST00000620219 SRGAP2CP0DJJ0 459 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 RINT1Q6NUQ1 792 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 JADE2Q9NQC1 790 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 PAXBP1Q9Y5B6 917 aa17.27■□□□□ 0.36
CPSF1-213ENST00000620219 ATP9AO75110 1047 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 SLITRK3O94933 977 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 NOVP48745 357 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 TRIM14Q14142 442 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 KNOP1Q1ED39 458 aaKnown RBP17.27■□□□□ 0.35
CPSF1-213ENST00000620219 TEX35Q5T0J7 233 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 MYRIPQ8NFW9 859 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 NRBP2Q9NSY0 501 aa17.27■□□□□ 0.35
CPSF1-213ENST00000620219 ETNPPLQ8TBG4 499 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 EFCC1Q9HA90 598 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 EXOC7Q9UPT5 735 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 CASZ1Q86V15 1759 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 LIG4P49917 911 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 SOX10P56693 466 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 TMTC1Q8IUR5 882 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 SYT2Q8N9I0 419 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-213ENST00000620219 TC2NQ8N9U0 490 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 SPATA20Q8TB22 786 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 KIFC3Q9BVG8 833 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 SNCAIPQ9Y6H5 919 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 TMCO5BA8MYB1 307 aa17.26■□□□□ 0.35
CPSF1-213ENST00000620219 ADAMTSL1Q8N6G6 1762 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 PIK3CDO00329 1044 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 VWA3BQ502W6 1294 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 CCDC155Q8N6L0 562 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 NUP58Q9BVL2 599 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 ZNF302Q9NR11 478 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 NR3C1P04150 777 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 PPATQ06203 517 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 KIF5AQ12840 1032 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 PCNX4Q63HM2 1172 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 SGIP1Q9BQI5 828 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 LGALS16A8MUM7 142 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 KLRC4O43908 158 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 GNA14O95837 355 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 TXNP10599 105 aaKnown RBP17.25■□□□□ 0.35
CPSF1-213ENST00000620219 FAM160B1Q5W0V3 765 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 CHST13Q8NET6 341 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 SEMA6BQ9H3T3 888 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 AGO4Q9HCK5 861 aaKnown RBP17.25■□□□□ 0.35
CPSF1-213ENST00000620219 TNNI1P19237 187 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 SFNP31947 248 aa17.25■□□□□ 0.35
CPSF1-213ENST00000620219 ZBED3Q96IU2 234 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-213ENST00000620219 ZNF215Q9UL58 517 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-213ENST00000620219 COL11A2P13942 1736 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-213ENST00000620219 TTC26A0AVF1 554 aa17.24■□□□□ 0.35
CPSF1-213ENST00000620219 OPLAHO14841 1288 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms