RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 IPO5O00410 1097 aaKnown RBP8.67□□□□□ -1.02
CUX1-219ENST00000606749 HBP1O60381 514 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 LINC00271P0C7V0 271 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 SIP14410 1827 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 RPS6KB1P23443 525 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 KLRC1P26715 233 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 CD52P31358 61 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 BMPR1AP36894 532 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 SLC26A2P50443 739 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 EVCP57679 992 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 TMEM62Q0P6H9 643 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 NTRK3Q16288 839 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 PTPROQ16827 1216 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 MCTP2Q6DN12 878 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 SWSAP1Q6NVH7 229 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 CRIPAKQ8N1N5 446 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 FIBCD1Q8N539 461 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 ZNF689Q96CS4 500 aaPredicted RBP8.67□□□□□ -1.02
CUX1-219ENST00000606749 UIMC1Q96RL1 719 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 CELF4Q9BZC1 486 aaKnown RBP8.67□□□□□ -1.02
CUX1-219ENST00000606749 C6orf50Q9HD87 102 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 RNF216Q9NWF9 866 aaPredicted RBP8.67□□□□□ -1.02
CUX1-219ENST00000606749 TRPV2Q9Y5S1 764 aa8.67□□□□□ -1.02
CUX1-219ENST00000606749 IGSF9BQ9UPX0 1349 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 KDM3AQ9Y4C1 1321 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 M0QZ92 97 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 BACH1O14867 736 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 EDIL3O43854 480 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 PPFIA3O75145 1194 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 DGKIO75912 1065 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 REC8O95072 547 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 RB1P06400 928 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 ATP4AP20648 1035 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 PSMA5P28066 241 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 GNA11P29992 359 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 PDIA3P30101 505 aaKnown RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 CIITAP33076 1130 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 KRT76Q01546 638 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 AKAP17AQ02040 695 aaKnown RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 LEXMQ3ZCV2 418 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 FAM160B1Q5W0V3 765 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 MIS18BP1Q6P0N0 1132 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 PDXDC2PQ6P474 469 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 CCDC60Q8IWA6 550 aaPredicted RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 KIAA0319LQ8IZA0 1049 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 BANK1Q8NDB2 785 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 ATP8B4Q8TF62 1192 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 CCDC12Q8WUD4 166 aaPredicted RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 LINC01599Q8WXQ3 324 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 CLP1Q92989 425 aaKnown RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 PHKBQ93100 1093 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 ZNF577Q9BSK1 485 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 FTHL17Q9BXU8 183 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 UBE2ZQ9H832 354 aaPredicted RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 RC3H2Q9HBD1 1191 aaKnown RBP8.66□□□□□ -1.02
CUX1-219ENST00000606749 ZNF302Q9NR11 478 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 PADI3Q9ULW8 664 aa8.66□□□□□ -1.02
CUX1-219ENST00000606749 COL4A4P53420 1690 aaPredicted RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 TTC28Q96AY4 2481 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 NID2Q14112 1375 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 TTC3P53804 2025 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 ADGRA3Q8IWK6 1321 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 ZBTB42B2RXF5 422 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 IFNAR1P17181 557 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 COL9A1P20849 921 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 KCNA5P22460 613 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 CTNNB1P35222 781 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 CCT2P78371 535 aaKnown RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 PAK2Q13177 524 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 BTG3Q14201 252 aaPredicted RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 PRR16Q569H4 304 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 TCEAL5Q5H9L2 206 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 ZNF484Q5JVG2 852 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 ZNF746Q6NUN9 644 aaPredicted RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 RUFY3Q7L099 469 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 REXO1Q8N1G1 1221 aaKnown RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 BICD2Q8TD16 824 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 RASGRP4Q8TDF6 673 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 SLC26A6Q9BXS9 759 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 RNF26Q9BY78 433 aaPredicted RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 TMX1Q9H3N1 280 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 CDHR5Q9HBB8 845 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 NCOA5Q9HCD5 579 aaKnown RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 ZSWIM6Q9HCJ5 1215 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 TBC1D22BQ9NU19 505 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 RWDD3Q9Y3V2 267 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 PCDHA10Q9Y5I2 948 aa8.65□□□□□ -1.02
CUX1-219ENST00000606749 MAFBQ9Y5Q3 323 aaPredicted RBP8.65□□□□□ -1.02
CUX1-219ENST00000606749 COL1A2P08123 1366 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 GRXCR2A6NFK2 248 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 GRM6O15303 877 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 EPB41L2O43491 1005 aaKnown RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 PSAPP07602 524 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 STAG3L1P0CL83 205 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 USP11P51784 963 aa8.64□□□□□ -1.03
CUX1-219ENST00000606749 SETQ01105 290 aaPredicted RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 NFX1Q12986 1120 aaKnown RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 TOB2Q14106 344 aaPredicted RBP8.64□□□□□ -1.03
CUX1-219ENST00000606749 COL19A1Q14993 1142 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms