RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ZNF746Q6NUN9 644 aaPredicted RBP12.98□□□□□ -0.33
VRK3-223ENST00000601341 TC2NQ8N9U0 490 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 GIMAP8Q8ND71 665 aaPredicted RBP12.98□□□□□ -0.33
VRK3-223ENST00000601341 RDM1Q8NG50 284 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 MED15Q96RN5 788 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 RGL1Q9NZL6 768 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 OGFRQ9NZT2 677 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 SAMM50Q9Y512 469 aa12.98□□□□□ -0.33
VRK3-223ENST00000601341 LCTP09848 1927 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 P4HBP07237 508 aaKnown RBP12.97□□□□□ -0.33
VRK3-223ENST00000601341 TPM1P09493 284 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 FECHP22830 423 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 PBX1P40424 430 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 CYP4A11Q02928 519 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 TRIM65Q6PJ69 517 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 ARMCX2Q7L311 632 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 APTXQ7Z2E3 356 aaKnown RBP12.97□□□□□ -0.33
VRK3-223ENST00000601341 KCNK18Q7Z418 384 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 TPH2Q8IWU9 490 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 REXO1L1PQ8IX06 675 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 DYDC2Q96IM9 177 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 BLZF1Q9H2G9 400 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 JPH1Q9HDC5 661 aaPredicted RBP12.97□□□□□ -0.33
VRK3-223ENST00000601341 RWDD2AQ9UIY3 292 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 POTEFA5A3E0 1075 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 PPP1R3GB7ZBB8 358 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 MAP2K2P36507 400 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 TRIM14Q14142 442 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 CTTNQ14247 550 aaKnown RBP12.97□□□□□ -0.33
VRK3-223ENST00000601341 NEDD9Q14511 834 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 MCM6Q14566 821 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 MORN1Q5T089 497 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 POTEGQ6S5H5 508 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 MAMDC4Q6UXC1 1216 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 SYT10Q6XYQ8 523 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 EEPD1Q7L9B9 569 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 NACC1Q96RE7 527 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 C7orf25Q9BPX7 421 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 TRIM9Q9C026 710 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 SLC9A2Q9UBY0 812 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 DNAI1Q9UI46 699 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 PPP2R2CQ9Y2T4 447 aa12.97□□□□□ -0.33
VRK3-223ENST00000601341 AKR1B15C9JRZ8 316 aaPredicted RBP12.96□□□□□ -0.34
VRK3-223ENST00000601341 E9PMD0 336 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 CCNE2O96020 404 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 PLA2G4BP0C869 781 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 CASP1P29466 404 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 SP2Q02086 613 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 MAP2K5Q13163 448 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 ZNF658Q5TYW1 1059 aaPredicted RBP12.96□□□□□ -0.34
VRK3-223ENST00000601341 MSL3Q8N5Y2 521 aaKnown RBP12.96□□□□□ -0.34
VRK3-223ENST00000601341 MAML3Q96JK9 1138 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 LXNQ9BS40 222 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 ZSWIM4Q9H7M6 989 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 SAMSN1Q9NSI8 373 aaKnown RBP12.96□□□□□ -0.34
VRK3-223ENST00000601341 BMP2KQ9NSY1 1161 aaPredicted RBP12.96□□□□□ -0.34
VRK3-223ENST00000601341 PCDHA10Q9Y5I2 948 aa12.96□□□□□ -0.34
VRK3-223ENST00000601341 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.96□□□□□ -0.34
VRK3-223ENST00000601341 TNPO2O14787 897 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 RPN1P04843 607 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 SSBP05455 408 aaKnown RBP eCLIP12.95□□□□□ -0.34
VRK3-223ENST00000601341 HOXC6P09630 235 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 UBA1P22314 1058 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 QARSP47897 775 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 TUBB2AQ13885 445 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 KCNB1Q14721 858 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 CYFIP1Q7L576 1253 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 CNGA4Q8IV77 575 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 FBXO16Q8IX29 292 aaPredicted RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 ANKRD20A12PQ8NF67 263 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 SCFD2Q8WU76 684 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 SOCS4Q8WXH5 440 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 CCDC47Q96A33 483 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 TUBB2BQ9BVA1 445 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 VTA1Q9NP79 307 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 LIMA1Q9UHB6 759 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 DDX41Q9UJV9 622 aaKnown RBP12.95□□□□□ -0.34
VRK3-223ENST00000601341 SYNGAP1Q96PV0 1343 aa12.95□□□□□ -0.34
VRK3-223ENST00000601341 LYPLA2O95372 231 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 EYA4O95677 639 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 PSAPP07602 524 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 PPP1R2P41236 205 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 ACTR2P61160 394 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 PSMC5P62195 406 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 PSMC6P62333 389 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 TUBB4BP68371 445 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 ASIC1P78348 528 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 TTLL4Q14679 1199 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 CNNM4Q6P4Q7 775 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 SYT2Q8N9I0 419 aaPredicted RBP12.94□□□□□ -0.34
VRK3-223ENST00000601341 BANK1Q8NDB2 785 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 TINF2Q9BSI4 451 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 BCAS3Q9H6U6 928 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 MYMKA6NI61 221 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 EFCAB8A8MWE9 144 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 DKC1O60832 514 aaKnown RBP eCLIP12.94□□□□□ -0.346e-11■■■■■ 26.8
VRK3-223ENST00000601341 ECM2O94769 699 aaPredicted RBP12.94□□□□□ -0.34
VRK3-223ENST00000601341 RGS2P41220 211 aa12.94□□□□□ -0.34
VRK3-223ENST00000601341 VEGFBP49765 207 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms