RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 IFNAR1P17181 557 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 GNA11P29992 359 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 CCT2P78371 535 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 SETQ01105 290 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 TOB2Q14106 344 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 TSHZ1Q6ZSZ6 1077 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 RUFY3Q7L099 469 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 CCDC60Q8IWA6 550 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 RASGRP4Q8TDF6 673 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 UIMC1Q96RL1 719 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 UHRF1Q96T88 793 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 ZSWIM6Q9HCJ5 1215 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 COG5Q9UP83 839 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 PCDHA2Q9Y5H9 948 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 RALGAPA2Q2PPJ7 1873 aa17.09■□□□□ 0.33
SHKBP1-226ENST00000600791 LOXHD1Q8IVV2 1947 aa17.08■□□□□ 0.33
SHKBP1-226ENST00000600791 BACH1O14867 736 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 TMEM62Q0P6H9 643 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 EPC2Q52LR7 807 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 IER5Q5VY09 327 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 FAM160B1Q5W0V3 765 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 MTHFD1LQ6UB35 978 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 CCDC148Q8NFR7 591 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 HLA-CQ95604 372 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 SAMD11Q96NU1 681 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 ZNF577Q9BSK1 485 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 AGO3Q9H9G7 860 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 VPS54Q9P1Q0 977 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 TRPV2Q9Y5S1 764 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 TTC3P53804 2025 aa17.08■□□□□ 0.32
SHKBP1-226ENST00000600791 M0QZ92 97 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 CD52P31358 61 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 PRR16Q569H4 304 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 MIS18BP1Q6P0N0 1132 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 BICD2Q8TD16 824 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 ATP8B4Q8TF62 1192 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 LINC01599Q8WXQ3 324 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 NECAB3Q96P71 396 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 RC3H2Q9HBD1 1191 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 ZNF302Q9NR11 478 aa17.07■□□□□ 0.32
SHKBP1-226ENST00000600791 ADGRA3Q8IWK6 1321 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 IGSF9BQ9UPX0 1349 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 SMIM35A0A1B0GVV1 85 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 ENPP3O14638 875 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 HBP1O60381 514 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 NEFLP07196 543 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 CIITAP33076 1130 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 ZNF746Q6NUN9 644 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 SWSAP1Q6NVH7 229 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 PDXDC2PQ6P474 469 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 TMEM192Q8IY95 271 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 LENG9Q96B70 501 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 IL17RAQ96F46 866 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 CELF4Q9BZC1 486 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 UPF3BQ9BZI7 483 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 TBC1D22BQ9NU19 505 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 CYP46A1Q9Y6A2 500 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 SQORQ9Y6N5 450 aa17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 MYH9P35579 1960 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-226ENST00000600791 COL1A2P08123 1366 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 KDM3AQ9Y4C1 1321 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 H3BNC9 293 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 LINC00271P0C7V0 271 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 ATP4AP20648 1035 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 KLRC1P26715 233 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 MRPL38Q96DV4 380 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 TM6SF1Q9BZW5 370 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 SH3GLB2Q9NR46 395 aa17.05■□□□□ 0.32
SHKBP1-226ENST00000600791 WDR81Q562E7 1941 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 ZBTB42B2RXF5 422 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 EDIL3O43854 480 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 KRT76Q01546 638 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 PAK2Q13177 524 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 GPM6BQ13491 265 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 SMAP1Q8IYB5 467 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 TRIM22Q8IYM9 498 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 NME8Q8N427 588 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 FIBCD1Q8N539 461 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 LARP6Q9BRS8 491 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 FTHL17Q9BXU8 183 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 TCEAL9Q9UHQ7 104 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 PADI3Q9ULW8 664 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 MAFBQ9Y5Q3 323 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 EVPLQ92817 2033 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 ATG2AQ2TAZ0 1938 aa17.04■□□□□ 0.32
SHKBP1-226ENST00000600791 C22orf31O95567 290 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 CTNNB1P35222 781 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 NLRP5P59047 1200 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 PTPROQ16827 1216 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 ZNF484Q5JVG2 852 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 RTN4RL1Q86UN2 441 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 CKAP2LQ8IYA6 745 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 KIAA0319LQ8IZA0 1049 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 BBXQ8WY36 941 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 ZNF689Q96CS4 500 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 ZNF274Q96GC6 653 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 UBE2ZQ9H832 354 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 PCDHA10Q9Y5I2 948 aa17.03■□□□□ 0.32
SHKBP1-226ENST00000600791 MYO7AQ13402 2215 aa17.02■□□□□ 0.32
SHKBP1-226ENST00000600791 C5orf67F2Z3F1 127 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms