RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ERVFC1P60507 584 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 FAM189BP81408 668 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 PLCB4Q15147 1175 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 UBE2SQ16763 222 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 TTC22Q5TAA0 569 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 IER5Q5VY09 327 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 TMEM184AQ6ZMB5 413 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 CATIPQ7Z7H3 387 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 RSPH3Q86UC2 560 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 ZNF654Q8IZM8 581 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 CMTR1Q8N1G2 835 aaKnown RBP7.02□□□□□ -1.29
VRK3-220ENST00000600259 NCOA7Q8NI08 942 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 TRAPPC12Q8WVT3 735 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 GLG1Q92896 1179 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 RRP36Q96EU6 259 aaKnown RBP7.02□□□□□ -1.29
VRK3-220ENST00000600259 ASIC4Q96FT7 647 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 CDHR1Q96JP9 859 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 MTA3Q9BTC8 594 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 PHF7Q9BWX1 381 aaPredicted RBP7.02□□□□□ -1.29
VRK3-220ENST00000600259 FTHL17Q9BXU8 183 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 S1PR5Q9H228 398 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 PSTPIP2Q9H939 334 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 ERVK-5Q9HDB9 667 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 BARX2Q9UMQ3 279 aaPredicted RBP7.02□□□□□ -1.29
VRK3-220ENST00000600259 PCDHA6Q9UN73 950 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 USP15Q9Y4E8 981 aaPredicted RBP7.02□□□□□ -1.29
VRK3-220ENST00000600259 PCDHA8Q9Y5H6 950 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 TRPV2Q9Y5S1 764 aa7.02□□□□□ -1.29
VRK3-220ENST00000600259 PTPRZ1P23471 2315 aaPredicted RBP7.02□□□□□ -1.29
VRK3-220ENST00000600259 RALGAPA2Q2PPJ7 1873 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 DOCK5Q9H7D0 1870 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 SMIM35A0A1B0GVV1 85 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 hCG_1642624A0A1W2PR95 340 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 ERICH2A1L162 156 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 ZBTB42B2RXF5 422 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 C9IYK1 514 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 FSCN2O14926 492 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 PER2O15055 1255 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 DDAH1O94760 285 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 CSPG5O95196 566 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 RPLP2P05387 115 aaKnown RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 ARP10275 920 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 SCG2P13521 617 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 ATF7P17544 494 aaPredicted RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 ATP4AP20648 1035 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 SARSP49591 514 aaKnown RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 NDUFV1P49821 464 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 GNAQP50148 359 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 ACTR2P61160 394 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 IGBP1P78318 339 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 TMEM62Q0P6H9 643 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 ITGB3BPQ13352 177 aaPredicted RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 MTMR1Q13613 665 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 DSC3Q14574 896 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 DUSP6Q16828 381 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 TMEM266Q2M3C6 531 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 PAN2Q504Q3 1202 aaKnown RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 FAM102BQ5T8I3 360 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 TYW1BQ6NUM6 668 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 SYCE2Q6PIF2 218 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 MTHFD1LQ6UB35 978 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 FAM43BQ6ZT52 329 aaPredicted RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 PLPPR4Q7Z2D5 763 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 RBM23Q86U06 439 aaKnown RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 KIAA0319LQ8IZA0 1049 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 NME8Q8N427 588 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 FBXL6Q8N531 539 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 TMEM40Q8WWA1 233 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 CUL5Q93034 780 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 PBXIP1Q96AQ6 731 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 MXRA8Q9BRK3 442 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 LZTS2Q9BRK4 669 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 FAM49AQ9H0Q0 323 aaPredicted RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 CWH43Q9H720 699 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 TLE6Q9H808 572 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 KCNH7Q9NS40 1196 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 HCSTQ9UBK5 93 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 NOC2LQ9Y3T9 749 aaKnown RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 RIF1Q5UIP0 2472 aaKnown RBP7.01□□□□□ -1.29
VRK3-220ENST00000600259 NFASCO94856 1347 aa7.01□□□□□ -1.29
VRK3-220ENST00000600259 NLRC5Q86WI3 1866 aa7□□□□□ -1.29
VRK3-220ENST00000600259 CFAP54Q96N23 3096 aa7□□□□□ -1.29
VRK3-220ENST00000600259 SPTBN4Q9H254 2564 aa7□□□□□ -1.29
VRK3-220ENST00000600259 SPDYE4A6NLX3 237 aa7□□□□□ -1.29
VRK3-220ENST00000600259 MEIS1O00470 390 aa7□□□□□ -1.29
VRK3-220ENST00000600259 SH2B2O14492 632 aaPredicted RBP7□□□□□ -1.29
VRK3-220ENST00000600259 DHX15O43143 795 aaKnown RBP7□□□□□ -1.29
VRK3-220ENST00000600259 PPFIA3O75145 1194 aa7□□□□□ -1.29
VRK3-220ENST00000600259 CCNE2O96020 404 aa7□□□□□ -1.29
VRK3-220ENST00000600259 STAG3L1P0CL83 205 aa7□□□□□ -1.29
VRK3-220ENST00000600259 RXRAP19793 462 aa7□□□□□ -1.29
VRK3-220ENST00000600259 KLRC1P26715 233 aa7□□□□□ -1.29
VRK3-220ENST00000600259 AVPR2P30518 371 aa7□□□□□ -1.29
VRK3-220ENST00000600259 KIF5BP33176 963 aa7□□□□□ -1.29
VRK3-220ENST00000600259 LIFRP42702 1097 aa7□□□□□ -1.29
VRK3-220ENST00000600259 STAT5BP51692 787 aa7□□□□□ -1.29
VRK3-220ENST00000600259 PTPN5P54829 565 aa7□□□□□ -1.29
VRK3-220ENST00000600259 VCPP55072 806 aaKnown RBP7□□□□□ -1.29
VRK3-220ENST00000600259 KRT76Q01546 638 aa7□□□□□ -1.29
VRK3-220ENST00000600259 UBE3AQ05086 875 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms