RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PPP2R5CQ13362 524 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 RDM1Q8NG50 284 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 TUBE1Q9UJT0 475 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 RANBP2P49792 3224 aaKnown RBP17.14■□□□□ 0.33
LIG1-219ENST00000600055 TRIP12Q14669 1992 aaPredicted RBP17.13■□□□□ 0.33
LIG1-219ENST00000600055 ZBTB42B2RXF5 422 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 FGBP02675 491 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 CTSHP09668 335 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 TOB1P50616 345 aaPredicted RBP17.13■□□□□ 0.33
LIG1-219ENST00000600055 SPIRE1Q08AE8 756 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 MBTPS1Q14703 1052 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 TTC38Q5R3I4 469 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 NCAPH2Q6IBW4 605 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 SLFN12Q8IYM2 578 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 BANK1Q8NDB2 785 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 BBXQ8WY36 941 aaPredicted RBP17.13■□□□□ 0.33
LIG1-219ENST00000600055 RNPC3Q96LT9 517 aaKnown RBP17.13■□□□□ 0.33
LIG1-219ENST00000600055 MTMR9Q96QG7 549 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 OSBPL7Q9BZF2 842 aa17.13■□□□□ 0.33
LIG1-219ENST00000600055 RSPH10B2B2RC85 870 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 NBNO60934 754 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 RSPH10BP0C881 870 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 RFC2P35250 354 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 TXKP42681 527 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 FXR1P51114 621 aaKnown RBP eCLIP17.12■□□□□ 0.33
LIG1-219ENST00000600055 PRKCEQ02156 737 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 ZNF484Q5JVG2 852 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 PSRC1Q6PGN9 363 aaPredicted RBP17.12■□□□□ 0.33
LIG1-219ENST00000600055 MTHFD1LQ6UB35 978 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 OTOP2Q7RTS6 562 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 RPUSD2Q8IZ73 545 aaKnown RBP17.12■□□□□ 0.33
LIG1-219ENST00000600055 DNAJB3Q8WWF6 145 aa17.12■□□□□ 0.33
LIG1-219ENST00000600055 TNPO1Q92973 898 aaKnown RBP17.12■□□□□ 0.33
LIG1-219ENST00000600055 FAM49AQ9H0Q0 323 aaPredicted RBP17.12■□□□□ 0.33
LIG1-219ENST00000600055 NOL7Q9UMY1 257 aaKnown RBP17.12■□□□□ 0.33
LIG1-219ENST00000600055 TMEM150BA6NC51 233 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 STBD1O95210 358 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 OATP04181 439 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 KLRC1P26715 233 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 TRAPPC10P48553 1259 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 TCTN1Q2MV58 587 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 LRIT3Q3SXY7 679 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 TAF2Q6P1X5 1199 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 HERVK_113Q902F9 699 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 INTS4Q96HW7 963 aaKnown RBP17.11■□□□□ 0.33
LIG1-219ENST00000600055 LRCH3Q96II8 777 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 FTOQ9C0B1 505 aaKnown RBP eCLIP17.11■□□□□ 0.33
LIG1-219ENST00000600055 TTC12Q9H892 705 aaPredicted RBP17.11■□□□□ 0.33
LIG1-219ENST00000600055 CXXC1Q9P0U4 656 aaPredicted RBP17.11■□□□□ 0.33
LIG1-219ENST00000600055 PCDHA12Q9UN75 941 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 PCDHB6Q9Y5E3 794 aa17.11■□□□□ 0.33
LIG1-219ENST00000600055 SCN5AQ14524 2016 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 EPHA7Q15375 998 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 HSCBQ8IWL3 235 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 C4orf32Q8N8J7 132 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 DYDC2Q96IM9 177 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 FAM167AQ96KS9 214 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 SH2D3AQ9BRG2 576 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 NRBP2Q9NSY0 501 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 RGL1Q9NZL6 768 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 WRAP73Q9P2S5 460 aaPredicted RBP17.1■□□□□ 0.33
LIG1-219ENST00000600055 PCDHA2Q9Y5H9 948 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 COL1A2P08123 1366 aa17.1■□□□□ 0.33
LIG1-219ENST00000600055 VPS37CA5D8V6 355 aaPredicted RBP17.09■□□□□ 0.33
LIG1-219ENST00000600055 CAND2O75155 1236 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 C22orf31O95567 290 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 CHRNA1P02708 482 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 CXCL10P02778 98 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 OR52Z1P0C646 297 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 PSMC5P62195 406 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 TMEM62Q0P6H9 643 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 FAM26DQ5JW98 314 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 RASIP1Q5U651 963 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 FAM109BQ6ICB4 259 aaPredicted RBP17.09■□□□□ 0.33
LIG1-219ENST00000600055 RPAINQ86UA6 219 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 SEPT9Q9UHD8 586 aaPredicted RBP17.09■□□□□ 0.33
LIG1-219ENST00000600055 TANC1Q9C0D5 1861 aa17.09■□□□□ 0.33
LIG1-219ENST00000600055 TRIOBPQ9H2D6 2365 aa17.08■□□□□ 0.33
LIG1-219ENST00000600055 SMIM35A0A1B0GVV1 85 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 POTEMA6NI47 508 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 DDX11L8A8MPP1 907 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 PARNO95453 639 aaKnown RBP17.08■□□□□ 0.32
LIG1-219ENST00000600055 P4HBP07237 508 aaKnown RBP17.08■□□□□ 0.32
LIG1-219ENST00000600055 PFKMP08237 780 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 TECP42680 631 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 QARSP47897 775 aaKnown RBP17.08■□□□□ 0.32
LIG1-219ENST00000600055 CYP4A11Q02928 519 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 MGAT3Q09327 533 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 ORC2Q13416 577 aaPredicted RBP17.08■□□□□ 0.32
LIG1-219ENST00000600055 CTTNQ14247 550 aaKnown RBP17.08■□□□□ 0.32
LIG1-219ENST00000600055 MTERF2Q49AM1 385 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 XKR3Q5GH77 459 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 PLA2G4FQ68DD2 849 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 RSPH3Q86UC2 560 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 EIF2AK1Q9BQI3 630 aaKnown RBP17.08■□□□□ 0.32
LIG1-219ENST00000600055 LXNQ9BS40 222 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 CDY2AQ9Y6F7 541 aa17.08■□□□□ 0.32
LIG1-219ENST00000600055 ZBBXA8MT70 800 aa17.07■□□□□ 0.32
LIG1-219ENST00000600055 GRXCR1A8MXD5 290 aa17.07■□□□□ 0.32
LIG1-219ENST00000600055 SYT1P21579 422 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms