RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 GRIK4Q16099 956 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 MARCH8Q5T0T0 291 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 CATIPQ7Z7H3 387 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 ADGRD2Q7Z7M1 963 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 RTN4RL1Q86UN2 441 aaPredicted RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 MB21D2Q8IYB1 491 aaPredicted RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 ZNF654Q8IZM8 581 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 SRBD1Q8N5C6 995 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 NCOA7Q8NI08 942 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 SAMD11Q96NU1 681 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 POP1Q99575 1024 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 LRRC2Q9BYS8 371 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 EHMT1Q9H9B1 1298 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 RC3H2Q9HBD1 1191 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 LY9Q9HBG7 655 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 HCSTQ9UBK5 93 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 TUBE1Q9UJT0 475 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 ZNF215Q9UL58 517 aaPredicted RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 MRPL42Q9Y6G3 142 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 ADGRA3Q8IWK6 1321 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 PLXNA3P51805 1871 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 TTC3P53804 2025 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 H0Y858 1186 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 MBTPS2O43462 519 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 PPFIA3O75145 1194 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 GNAT1P11488 350 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 NT5C2P49902 561 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 COL19A1Q14993 1142 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 ST3GAL2Q16842 350 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 TMEM266Q2M3C6 531 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 FBXO47Q5MNV8 452 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 PCNX4Q63HM2 1172 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 RBM23Q86U06 439 aaKnown RBP9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 SAMD3Q8N6K7 520 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 CYP2W1Q8TAV3 490 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 GLG1Q92896 1179 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 RMDN1Q96DB5 314 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 RRP36Q96EU6 259 aaKnown RBP9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 PCYT2Q99447 389 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 TLR9Q9NR96 1032 aa9.94□□□□□ -0.82
SHKBP1-220ENST00000599716 PLXNA4Q9HCM2 1894 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 OTOGLQ3ZCN5 2332 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 NRCAMQ92823 1304 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 PRC1O43663 620 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 CAND2O75155 1236 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 INSRRP14616 1297 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 MRPS6P82932 125 aaKnown RBP9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 CTC1Q2NKJ3 1217 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 NLRX1Q86UT6 975 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 RNF135Q8IUD6 432 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 ADSSL1Q8N142 457 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 CTCFLQ8NI51 663 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 APBB2Q92870 758 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 CUL5Q93034 780 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 NKD2Q969F2 451 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 ZNF689Q96CS4 500 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 PPP1R16BQ96T49 567 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 RBM8AQ9Y5S9 174 aaKnown RBP9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 HELZ2Q9BYK8 2649 aaKnown RBP9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 SPEGQ15772 3267 aa9.93□□□□□ -0.82
SHKBP1-220ENST00000599716 C5orf67F2Z3F1 127 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 DDX39AO00148 427 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SGSM2O43147 1006 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 STAM2O75886 525 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 DGKIO75912 1065 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 ITGB1P05556 798 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 NDUFV1P49821 464 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 VCPP55072 806 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 MTMR1Q13613 665 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SART3Q15020 963 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SMAD2Q15796 467 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 MCTP2Q6DN12 878 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 NFXL1Q6ZNB6 911 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 TSHZ1Q6ZSZ6 1077 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 HEATR3Q7Z4Q2 680 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SKAP1Q86WV1 359 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 KLHL23Q8NBE8 558 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SEPT1Q8WYJ6 367 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 CLP1Q92989 425 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SENP7Q9BQF6 1050 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 C11orf84Q9BUA3 381 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SPZ1Q9BXG8 430 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 PSTPIP2Q9H939 334 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 CDHR5Q9HBB8 845 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SEC63Q9UGP8 760 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 PADI3Q9ULW8 664 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 BARX2Q9UMQ3 279 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 PCDHA6Q9UN73 950 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 PLAGL2Q9UPG8 496 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 GINS2Q9Y248 185 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 PCDHA8Q9Y5H6 950 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 UBIAD1Q9Y5Z9 338 aa9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 SMG1Q96Q15 3661 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-220ENST00000599716 MBLAC1A4D2B0 266 aaPredicted RBP9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 STXBP3O00186 592 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 PIK3CDO00329 1044 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 SH2B2O14492 632 aaPredicted RBP9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 PER2O15055 1255 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 MGEA5O60502 916 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 GLP2RO95838 553 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms