RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CELF4Q9BZC1 486 aaKnown RBP14.3□□□□□ -0.12
TRIM28-212ENST00000597995 FAM49AQ9H0Q0 323 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-212ENST00000597995 ALG13Q9NP73 1137 aaKnown RBP14.3□□□□□ -0.12
TRIM28-212ENST00000597995 KCNH7Q9NS40 1196 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 PKD2L1Q9P0L9 805 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 MRPL42Q9Y6G3 142 aaKnown RBP14.3□□□□□ -0.12
TRIM28-212ENST00000597995 ATG2AQ2TAZ0 1938 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 IGSF9BQ9UPX0 1349 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 KDM3AQ9Y4C1 1321 aa14.3□□□□□ -0.12
TRIM28-212ENST00000597995 SMIM35A0A1B0GVV1 85 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 ATG7O95352 703 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 FOSP01100 380 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-212ENST00000597995 SLC26A2P50443 739 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 STAT5BP51692 787 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 ACTR2P61160 394 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 PLCB4Q15147 1175 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 TSGA10IPQ3SY00 556 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 HERC4Q5GLZ8 1057 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-212ENST00000597995 HEATR3Q7Z4Q2 680 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 SGMS1Q86VZ5 419 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 CCDC82Q8N4S0 544 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 SPPL3Q8TCT6 385 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 TCEANC2Q96MN5 208 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 SDF4Q9BRK5 362 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 IGFLR1Q9H665 355 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 CD207Q9UJ71 328 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 PADI3Q9ULW8 664 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 TRPC6Q9Y210 931 aa14.29□□□□□ -0.12
TRIM28-212ENST00000597995 hCG_1642624A0A1W2PR95 340 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 TBX10O75333 385 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 EYA4O95677 639 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 ITGB1P05556 798 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 SCG2P13521 617 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 PAK2Q13177 524 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 ZBTB10Q96DT7 871 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 MSLNLQ96KJ4 702 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 NEK1Q96PY6 1258 aa14.28□□□□□ -0.12
TRIM28-212ENST00000597995 IGKV6D-21A0A0A0MT36 114 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 STXBP3O00186 592 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 LINC01565O15544 149 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 DNAJB1P25685 340 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 GTF2F1P35269 517 aaKnown RBP eCLIP14.27□□□□□ -0.135e-6■■□□□ 13.8
TRIM28-212ENST00000597995 KRT76Q01546 638 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 CLUL1Q15846 466 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 CEP55Q53EZ4 464 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 PPP1R18Q6NYC8 613 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 MTHFD1LQ6UB35 978 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 SYNE3Q6ZMZ3 975 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 ALYREFQ86V81 257 aaKnown RBP14.27□□□□□ -0.13
TRIM28-212ENST00000597995 RNF135Q8IUD6 432 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 EFHBQ8N7U6 833 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 KLHL23Q8NBE8 558 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 CYP2W1Q8TAV3 490 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 KCNB2Q92953 911 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 MFSD14AQ96MC6 490 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 AGO4Q9HCK5 861 aaKnown RBP14.27□□□□□ -0.13
TRIM28-212ENST00000597995 RIC8AQ9NPQ8 531 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 RBM28Q9NW13 759 aaKnown RBP14.27□□□□□ -0.13
TRIM28-212ENST00000597995 RNF216Q9NWF9 866 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-212ENST00000597995 BRPF3Q9ULD4 1205 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 C5orf42Q9H799 3197 aa14.27□□□□□ -0.13
TRIM28-212ENST00000597995 MEIS1O00470 390 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 HBP1O60381 514 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 ARP10275 920 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 KLRC1P26715 233 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 SARSP49591 514 aaKnown RBP14.26□□□□□ -0.13
TRIM28-212ENST00000597995 NDUFV1P49821 464 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 TMEM62Q0P6H9 643 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 COASYQ13057 564 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 ODR4Q5SWX8 454 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 RNF20Q5VTR2 975 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 WWC2Q6AWC2 1192 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 DHX32Q7L7V1 743 aaKnown RBP14.26□□□□□ -0.13
TRIM28-212ENST00000597995 NIPA1Q7RTP0 329 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 MICU3Q86XE3 530 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 TRAPPC12Q8WVT3 735 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 POF1BQ8WVV4 589 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 GLT8D2Q9H1C3 349 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 TMX1Q9H3N1 280 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 CLEC1BQ9P126 229 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 LRFN2Q9ULH4 789 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 PCDHB7Q9Y5E2 793 aa14.26□□□□□ -0.13
TRIM28-212ENST00000597995 LOXHD1Q8IVV2 1947 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 CNTNAP5Q8WYK1 1306 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 hCG_1984214I3L0E3 225 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 CPA1P15085 419 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 SREBF1P36956 1147 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 NAPAP54920 295 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 UBE3AQ05086 875 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 NFX1Q12986 1120 aaKnown RBP14.25□□□□□ -0.13
TRIM28-212ENST00000597995 ITGB3BPQ13352 177 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-212ENST00000597995 AP3B2Q13367 1082 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 PAN2Q504Q3 1202 aaKnown RBP14.25□□□□□ -0.13
TRIM28-212ENST00000597995 TYW1BQ6NUM6 668 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 APOA5Q6Q788 366 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 HFE2Q6ZVN8 426 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 BMP8AQ7Z5Y6 402 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 ADGRD2Q7Z7M1 963 aa14.25□□□□□ -0.13
TRIM28-212ENST00000597995 ZNF713Q8N859 430 aaPredicted RBP14.25□□□□□ -0.13
TRIM28-212ENST00000597995 SMRP1Q8NCR6 262 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms