RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.67■□□□□ 0.26
UPF1-204ENST00000596842 PPP1R37O75864 691 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 KIF4AO95239 1232 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 TTLL1O95922 423 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 PLCG2P16885 1265 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 CYP11B2P19099 503 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 PSMD2Q13200 908 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 TRIM59Q8IWR1 403 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 TRIM51Q9BSJ1 452 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 NT5C3AQ9H0P0 336 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 NOC2LQ9Y3T9 749 aaKnown RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 LRRN2O75325 713 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 KRT13P13646 458 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 SCP2P22307 547 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 CDC37Q16543 378 aaPredicted RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 ASPRV1Q53RT3 343 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 MMS22LQ6ZRQ5 1243 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 ZNF473Q8WTR7 871 aaKnown RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 ARAP2Q8WZ64 1704 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 DDX4Q9NQI0 724 aaKnown RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 SERPINB13Q9UIV8 391 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 DAGLAQ9Y4D2 1042 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 TBCAO75347 108 aaKnown RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 HNRNPH1P31943 449 aaKnown RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 HSD17B3P37058 310 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 RHBDL3P58872 404 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 IQCKQ8N0W5 287 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 PROM2Q8N271 834 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 METTL13Q8N6R0 699 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 CAVIN3Q969G5 261 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 TAF1DQ9H5J8 278 aaPredicted RBP16.66■□□□□ 0.26
UPF1-204ENST00000596842 RGL1Q9NZL6 768 aa16.66■□□□□ 0.26
UPF1-204ENST00000596842 GPR75-ASB3A0A0A6YYF3 556 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 CYP2J2P51589 502 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 VPS36Q86VN1 386 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 NLRP14Q86W24 1093 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 SPICE1Q8N0Z3 855 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 PIK3R5Q8WYR1 880 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 NUCKS1Q9H1E3 243 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 OSGEPQ9NPF4 335 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 GDF3Q9NR23 364 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 DNM3Q9UQ16 869 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 DOT1LQ8TEK3 1739 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 CLNS1AP54105 237 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 DHX9Q08211 1270 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 ZNF543Q08ER8 600 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 SF3B2Q13435 895 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 GLE1Q53GS7 698 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 GLYCTKQ8IVS8 523 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 INPP4AQ96PE3 977 aaPredicted RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 SELENOSQ9BQE4 189 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 NEUROG2Q9H2A3 272 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 PKD2L1Q9P0L9 805 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 CPSF2Q9P2I0 782 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 LCA5LO95447 670 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 AFPP02771 609 aaKnown RBP16.65■□□□□ 0.26
UPF1-204ENST00000596842 QRICH1Q2TAL8 776 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 REEP2Q9BRK0 252 aa16.65■□□□□ 0.26
UPF1-204ENST00000596842 PGRMC1O00264 195 aaKnown RBP16.64■□□□□ 0.25
UPF1-204ENST00000596842 FGGP02679 453 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 H2AFZP0C0S5 128 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 TMEM119Q4V9L6 283 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 H2AFVQ71UI9 128 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 CYP2W1Q8TAV3 490 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 MDM1Q8TC05 714 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 CCDC114Q96M63 670 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 HGSO14964 777 aaPredicted RBP16.64■□□□□ 0.25
UPF1-204ENST00000596842 FLOT1O75955 427 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 MDH1P40925 334 aaKnown RBP16.64■□□□□ 0.25
UPF1-204ENST00000596842 N4BP2L2Q92802 583 aaPredicted RBP16.64■□□□□ 0.25
UPF1-204ENST00000596842 ANO3Q9BYT9 981 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 NAGPAQ9UK23 515 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 SNED1Q8TER0 1413 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 DCDC2CA8MYV0 355 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 ZBTB5O15062 677 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 AKAP3O75969 853 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 PSEN1P49768 467 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 CPLX4Q7Z7G2 160 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 TAX1BP1Q86VP1 789 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 CATSPER3Q86XQ3 398 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 TPH2Q8IWU9 490 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 EPN3Q9H201 632 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 POLLQ9UGP5 575 aa16.64■□□□□ 0.25
UPF1-204ENST00000596842 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.64■□□□□ 0.25
UPF1-204ENST00000596842 GDF11O95390 407 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 MAGOHP61326 146 aaKnown RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 ITIH3Q06033 890 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 CTTNQ14247 550 aaKnown RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 PTGISQ16647 500 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 ZCWPW2Q504Y3 356 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 ZC2HC1CQ53FD0 456 aaPredicted RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 WHAMMQ8TF30 809 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 MAGOHBQ96A72 148 aaKnown RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 CABS1Q96KC9 395 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 DHX36Q9H2U1 1008 aaKnown RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 AJAP1Q9UKB5 411 aaPredicted RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 ZBTB39O15060 712 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 MEFVO15553 781 aaPredicted RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 GNA14O95837 355 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 E2F5Q15329 346 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms