RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 KRT76Q01546 638 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 TFF2Q03403 129 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 NONOQ15233 471 aaKnown RBP eCLIP17.11■□□□□ 0.33
TRIM28-205ENST00000595028 TCTN1Q2MV58 587 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 FAM160B1Q5W0V3 765 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 MIS18BP1Q6P0N0 1132 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 RUFY4Q6ZNE9 571 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 SMAP1Q8IYB5 467 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-205ENST00000595028 KIF2CQ99661 725 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 TSPYL2Q9H2G4 693 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-205ENST00000595028 GJB4Q9NTQ9 266 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 MSRAQ9UJ68 235 aa17.11■□□□□ 0.33
TRIM28-205ENST00000595028 YBX2Q9Y2T7 364 aaKnown RBP17.11■□□□□ 0.33
TRIM28-205ENST00000595028 CYP3A7-CYP3A51PA0A087WV96 503 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 RRN3P2A6NIE6 340 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 CYP3A7P24462 503 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 RABGGTBP53611 331 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 WDR5P61964 334 aaKnown RBP17.1■□□□□ 0.33
TRIM28-205ENST00000595028 IGBP1P78318 339 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 INF2Q27J81 1249 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 Q4G0T1 1027 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 MARCH8Q5T0T0 291 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 MOXD1Q6UVY6 613 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 RPAINQ86UA6 219 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 PHOSPHO2Q8TCD6 241 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 SLC5A5Q92911 643 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 TNPO1Q92973 898 aaKnown RBP17.1■□□□□ 0.33
TRIM28-205ENST00000595028 MBOAT7Q96N66 472 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 ZNF302Q9NR11 478 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 PCDHA11Q9Y5I1 949 aa17.1■□□□□ 0.33
TRIM28-205ENST00000595028 CCDC194A0A1B0GVG4 234 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 ABHD14A-ACY1A0A1B0GW23 586 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 POTEB3A0JP26 581 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 RBAK-RBAKDNI3L0D1 243 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 JAK2O60674 1132 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 RBM25P49756 843 aaKnown RBP17.09■□□□□ 0.33
TRIM28-205ENST00000595028 KCNQ1P51787 676 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 FAM26DQ5JW98 314 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 POTEBQ6S5H4 581 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 HERC6Q8IVU3 1022 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 OXER1Q8TDS5 423 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 ATP8B4Q8TF62 1192 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 RIT2Q99578 217 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 NKX2-4Q9H2Z4 354 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 LIMCH1Q9UPQ0 1083 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 PCDHA10Q9Y5I2 948 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 IGSF9BQ9UPX0 1349 aa17.09■□□□□ 0.33
TRIM28-205ENST00000595028 LOXHD1Q8IVV2 1947 aa17.08■□□□□ 0.33
TRIM28-205ENST00000595028 COL1A2P08123 1366 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 WDR64B1ANS9 1081 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 GAS7O60861 476 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 EFCAB14O75071 495 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 RPLP2P05387 115 aaKnown RBP17.08■□□□□ 0.32
TRIM28-205ENST00000595028 PSAPP07602 524 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 PLEKHG4Q58EX7 1191 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 TMEM31Q5JXX7 168 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 LRCH2Q5VUJ6 765 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 SWSAP1Q6NVH7 229 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 PDXDC2PQ6P474 469 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 RSPH3Q86UC2 560 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 DBF4BQ8NFT6 615 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 TRAPPC12Q8WVT3 735 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 ZBTB10Q96DT7 871 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 TEKT3Q9BXF9 490 aa17.08■□□□□ 0.32
TRIM28-205ENST00000595028 HBP1O60381 514 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 MYOGP15173 224 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 KRT2P35908 639 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 DEFB103AP81534 67 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 MGAT3Q09327 533 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 MKRN4PQ13434 485 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-205ENST00000595028 IKBKEQ14164 716 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 LETM2Q2VYF4 491 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 PPP2R2DQ66LE6 453 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 NEK8Q86SG6 692 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 MICALL1Q8N3F8 863 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 ETNPPLQ8TBG4 499 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 DNAJB3Q8WWF6 145 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 SEPT8Q92599 483 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 GJA10Q969M2 543 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 OSBPL7Q9BZF2 842 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 FAM49AQ9H0Q0 323 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-205ENST00000595028 SLC28A3Q9HAS3 691 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 BRMS1Q9HCU9 246 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 DDX25Q9UHL0 483 aaKnown RBP17.07■□□□□ 0.32
TRIM28-205ENST00000595028 SAMM50Q9Y512 469 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 MAFBQ9Y5Q3 323 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-205ENST00000595028 EVPLQ92817 2033 aa17.07■□□□□ 0.32
TRIM28-205ENST00000595028 CHMP2AO43633 222 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 SLC37A4O43826 429 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 PSMD10O75832 226 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 CHRNA1P02708 482 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 GCFC2P16383 781 aaKnown RBP17.06■□□□□ 0.32
TRIM28-205ENST00000595028 ATP4AP20648 1035 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 SFNP31947 248 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 JAK3P52333 1124 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 MRPS6P82932 125 aaKnown RBP17.06■□□□□ 0.32
TRIM28-205ENST00000595028 AAK1Q2M2I8 961 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 PIK3AP1Q6ZUJ8 805 aa17.06■□□□□ 0.32
TRIM28-205ENST00000595028 ALYREFQ86V81 257 aaKnown RBP17.06■□□□□ 0.32
TRIM28-205ENST00000595028 CCDC83Q8IWF9 413 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms