RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 PARP1P09874 1014 aaKnown RBP12.72□□□□□ -0.37
ZNF540-209ENST00000590588 POLR2MP0CAP2 368 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 MTHFRP42898 656 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 PPFIA1Q13136 1202 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 FAM43BQ6ZT52 329 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-209ENST00000590588 PI4K2BQ8TCG2 481 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 MRPS27Q92552 414 aaKnown RBP12.72□□□□□ -0.37
ZNF540-209ENST00000590588 TCF25Q9BQ70 676 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 HINFPQ9BQA5 517 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 SENP7Q9BQF6 1050 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 RNF41Q9H4P4 317 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-209ENST00000590588 DCTPP1Q9H773 170 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 HELLSQ9NRZ9 838 aa12.72□□□□□ -0.37
ZNF540-209ENST00000590588 EP300Q09472 2414 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-209ENST00000590588 ZNF292O60281 2723 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 MBLAC1A4D2B0 266 aaPredicted RBP12.71□□□□□ -0.37
ZNF540-209ENST00000590588 TBKBP1A7MCY6 615 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 M0QZ92 97 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 FIBPO43427 364 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 NPR3P17342 541 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 SARSP49591 514 aaKnown RBP12.71□□□□□ -0.37
ZNF540-209ENST00000590588 NT5C2P49902 561 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 HAND2P61296 217 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 MRPS9P82933 396 aaKnown RBP12.71□□□□□ -0.37
ZNF540-209ENST00000590588 PLCB3Q01970 1234 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 PAK2Q13177 524 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 GRIK4Q16099 956 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 FCHSD1Q86WN1 690 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 IQCA1Q86XH1 822 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 TDRD5Q8NAT2 981 aaKnown RBP12.71□□□□□ -0.37
ZNF540-209ENST00000590588 COLGALT1Q8NBJ5 622 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 INPP4AQ96PE3 977 aaPredicted RBP12.71□□□□□ -0.37
ZNF540-209ENST00000590588 ENTPD7Q9NQZ7 604 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 TYW1Q9NV66 732 aaKnown RBP12.71□□□□□ -0.37
ZNF540-209ENST00000590588 CDH22Q9UJ99 828 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 USTQ9Y2C2 406 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 PLXNA4Q9HCM2 1894 aa12.71□□□□□ -0.37
ZNF540-209ENST00000590588 KIAA1671Q9BY89 1806 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 EPG5Q9HCE0 2579 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 HIDE1A8MVS5 230 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 TRIM6-TRIM34B2RNG4 842 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 ZBTB5O15062 677 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 SP4Q02446 784 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 APOBRQ0VD83 1088 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 TRAF1Q13077 416 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 ATAT1Q5SQI0 421 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 MARCH8Q5T0T0 291 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 GIMAP8Q8ND71 665 aaPredicted RBP12.7□□□□□ -0.38
ZNF540-209ENST00000590588 CYP2W1Q8TAV3 490 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 RUBCNQ92622 972 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 ERAP1Q9NZ08 941 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 RTEL1Q9NZ71 1219 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 TELO2Q9Y4R8 837 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 TRPV2Q9Y5S1 764 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 KAT6AQ92794 2004 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 WDR87Q6ZQQ6 2873 aa12.7□□□□□ -0.38
ZNF540-209ENST00000590588 IGSF9BQ9UPX0 1349 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 RRN3P2A6NIE6 340 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 LAG3P18627 525 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 IBSPP21815 317 aaPredicted RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 SDHBP21912 280 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 TCF7P36402 384 aaPredicted RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 KRT17Q04695 432 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 SEMA3FQ13275 785 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 FAM102BQ5T8I3 360 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 ZC3H14Q6PJT7 736 aaKnown RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 TMC7Q7Z402 723 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 SEPT1Q8WYJ6 367 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 TNPO1Q92973 898 aaKnown RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 CELF4Q9BZC1 486 aaKnown RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 CYP26B1Q9NR63 512 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 DBR1Q9UK59 544 aaKnown RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 HCFC2Q9Y5Z7 792 aa12.69□□□□□ -0.38
ZNF540-209ENST00000590588 KMT2BQ9UMN6 2715 aaPredicted RBP12.69□□□□□ -0.38
ZNF540-209ENST00000590588 NCOR2Q9Y618 2525 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 ZMYM6O95789 1325 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 STK25O00506 426 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 PPP1R11O60927 126 aaPredicted RBP12.68□□□□□ -0.38
ZNF540-209ENST00000590588 MARK3P27448 753 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 IGBP1P78318 339 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 NFX1Q12986 1120 aaKnown RBP12.68□□□□□ -0.38
ZNF540-209ENST00000590588 TDGQ13569 410 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 RSPO4Q2I0M5 234 aaPredicted RBP12.68□□□□□ -0.38
ZNF540-209ENST00000590588 MCMDC2Q4G0Z9 681 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 NME8Q8N427 588 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 MRPL43Q8N983 215 aaKnown RBP12.68□□□□□ -0.38
ZNF540-209ENST00000590588 GLG1Q92896 1179 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 MTMR8Q96EF0 704 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 FAM49AQ9H0Q0 323 aaPredicted RBP12.68□□□□□ -0.38
ZNF540-209ENST00000590588 TMX1Q9H3N1 280 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 SMARCAD1Q9H4L7 1026 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 CWH43Q9H720 699 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 C1orf112Q9NSG2 853 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 FBXL21Q9UKT6 434 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 R4GN57 208 aa12.68□□□□□ -0.38
ZNF540-209ENST00000590588 TPRP12270 2363 aaKnown RBP12.67□□□□□ -0.38
ZNF540-209ENST00000590588 EOMESO95936 686 aa12.67□□□□□ -0.38
ZNF540-209ENST00000590588 WEE2P0C1S8 567 aa12.67□□□□□ -0.38
ZNF540-209ENST00000590588 TMEM62Q0P6H9 643 aa12.67□□□□□ -0.38
ZNF540-209ENST00000590588 BMS1Q14692 1282 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms