RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 WNT8AQ9H1J5 351 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 SH3GLB2Q9NR46 395 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 VPS54Q9P1Q0 977 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 TET1Q8NFU7 2136 aa12.8□□□□□ -0.36
SMAD4-211ENST00000590499 COL6A3P12111 3177 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 MAFGO15525 162 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 LGALS2P05162 132 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 SUPT20HL2P0C7V6 817 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 CYP2C9P11712 490 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 CSF2RAP15509 400 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 ARHGAP4P98171 946 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 GUCA2AQ02747 115 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 PPIGQ13427 754 aaKnown RBP eCLIP12.79□□□□□ -0.368e-6■■■■□ 22.7
SMAD4-211ENST00000590499 MTMR1Q13613 665 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 AMHR2Q16671 573 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 KIAA0753Q2KHM9 967 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 JAKMIP3Q5VZ66 844 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 GDF6Q6KF10 455 aaPredicted RBP12.79□□□□□ -0.36
SMAD4-211ENST00000590499 TRIM22Q8IYM9 498 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 REXO1Q8N1G1 1221 aaKnown RBP12.79□□□□□ -0.36
SMAD4-211ENST00000590499 GIMAP8Q8ND71 665 aaPredicted RBP12.79□□□□□ -0.36
SMAD4-211ENST00000590499 CCDC148Q8NFR7 591 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 VWCEQ96DN2 955 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 C6orf50Q9HD87 102 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 HDAC6Q9UBN7 1215 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 GTF2IRD1Q9UHL9 959 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 KAT6AQ92794 2004 aa12.79□□□□□ -0.36
SMAD4-211ENST00000590499 CHD9Q3L8U1 2897 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 MEIS1O00470 390 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 NOP56O00567 594 aaKnown RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 WNT7AO00755 349 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 CPLX1O14810 134 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 DEXIO95424 95 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 LARGE1O95461 756 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 CYP3A4P08684 503 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 GNA11P29992 359 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 HOXC8P31273 242 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 SSRP1Q08945 709 aaKnown RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 ANKRD1Q15327 319 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 NPY5RQ15761 445 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 CEP55Q53EZ4 464 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 MCTP2Q6DN12 878 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 NIPA1Q7RTP0 329 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 FAM177A1Q8N128 213 aaPredicted RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 TMEM199Q8N511 208 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 SNIP1Q8TAD8 396 aaKnown RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 RASGRP4Q8TDF6 673 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 DHX38Q92620 1227 aaKnown RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 USB1Q9BQ65 265 aaKnown RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 SLKQ9H2G2 1235 aaPredicted RBP12.78□□□□□ -0.36
SMAD4-211ENST00000590499 KCNH7Q9NS40 1196 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 STK36Q9NRP7 1315 aa12.78□□□□□ -0.36
SMAD4-211ENST00000590499 IGLV3-22A0A075B6J6 115 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 FAM86B1E9PN63 330 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 H3BRB1 525 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 M0R2N6 131 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 EDIL3O43854 480 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 CTDNEP1O95476 244 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 FAM86B2P0C5J1 330 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 ARP10275 920 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 CHMP4BP1P59074 171 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 RBL2Q08999 1139 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 ITGB3BPQ13352 177 aaPredicted RBP12.77□□□□□ -0.37
SMAD4-211ENST00000590499 PTGISQ16647 500 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 ME3Q16798 604 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 TMEM240Q5SV17 173 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 RASIP1Q5U651 963 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 CPLX2Q6PUV4 134 aaKnown RBP12.77□□□□□ -0.37
SMAD4-211ENST00000590499 TRIM50Q86XT4 487 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 BICD2Q8TD16 824 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 AIFM3Q96NN9 605 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 KIF2CQ99661 725 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.77□□□□□ -0.37
SMAD4-211ENST00000590499 ALG1Q9BT22 464 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 TUT1Q9H6E5 874 aaKnown RBP12.77□□□□□ -0.37
SMAD4-211ENST00000590499 IL23AQ9NPF7 189 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 WDR81Q562E7 1941 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 NFASCO94856 1347 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 CHD7Q9P2D1 2997 aa12.77□□□□□ -0.37
SMAD4-211ENST00000590499 LOC100996750A0A140TA64 210 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 GSTTP1A0A1W2PQM5 241 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 CDKL5O76039 1030 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 CIITAP33076 1130 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 NEK4P51957 841 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 CCL23P55773 120 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 SP4Q02446 784 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 TRIM71Q2Q1W2 868 aaKnown RBP12.76□□□□□ -0.37
SMAD4-211ENST00000590499 C7orf31Q8N865 590 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 DAGLBQ8NCG7 672 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 GTF3C6Q969F1 213 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 SCLYQ96I15 445 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 RNPC3Q96LT9 517 aaKnown RBP12.76□□□□□ -0.37
SMAD4-211ENST00000590499 KRTAP4-6Q9BYQ5 205 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 AGO4Q9HCK5 861 aaKnown RBP12.76□□□□□ -0.37
SMAD4-211ENST00000590499 JPH1Q9HDC5 661 aaPredicted RBP12.76□□□□□ -0.37
SMAD4-211ENST00000590499 PCDHA4Q9UN74 947 aa12.76□□□□□ -0.37
SMAD4-211ENST00000590499 ZBTB24O43167 697 aaPredicted RBP12.75□□□□□ -0.37
SMAD4-211ENST00000590499 SMIM10L2AP0DMW4 78 aa12.75□□□□□ -0.37
SMAD4-211ENST00000590499 SMIM10L2BP0DMW5 78 aa12.75□□□□□ -0.37
SMAD4-211ENST00000590499 ACRP10323 421 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms