RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 SLC5A5Q92911 643 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 FAM20AQ96MK3 541 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 CTAGE1Q96RT6 745 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 SEMA6BQ9H3T3 888 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 GTF3C3Q9Y5Q9 886 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 KAT6AQ92794 2004 aa12.27□□□□□ -0.45
CLIP3-203ENST00000586457 IGKV6D-21A0A0A0MT36 114 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 BTBD18B2RXH4 712 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 TLL1O43897 1013 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 NBNO60934 754 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 ATP2B1P20020 1258 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 HOXC8P31273 242 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 NR5A1Q13285 461 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 TRIM71Q2Q1W2 868 aaKnown RBP12.26□□□□□ -0.45
CLIP3-203ENST00000586457 RASIP1Q5U651 963 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 MTHFD1LQ6UB35 978 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 APBB2Q92870 758 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 PCYT2Q99447 389 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 PBX4Q9BYU1 374 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 ZNF576Q9H609 170 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 GINS2Q9Y248 185 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 PCDHA2Q9Y5H9 948 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 PCDHA11Q9Y5I1 949 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 MAFBQ9Y5Q3 323 aaPredicted RBP12.26□□□□□ -0.45
CLIP3-203ENST00000586457 RANBP2P49792 3224 aaKnown RBP12.26□□□□□ -0.45
CLIP3-203ENST00000586457 COL1A2P08123 1366 aa12.26□□□□□ -0.45
CLIP3-203ENST00000586457 H3BQV1 296 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 TBX3O15119 743 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 MAGEB2O15479 319 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 CXCL10P02778 98 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 DNM2P50570 870 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 RABGGTBP53611 331 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 ADAM17P78536 824 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 MRPS6P82932 125 aaKnown RBP12.25□□□□□ -0.45
CLIP3-203ENST00000586457 TMEM62Q0P6H9 643 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 NPY5RQ15761 445 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 ODR4Q5SWX8 454 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 PPP2R2DQ66LE6 453 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 RUFY4Q6ZNE9 571 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 USP38Q8NB14 1042 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 DBF4BQ8NFT6 615 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 TRAPPC12Q8WVT3 735 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 WNT8BQ93098 351 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 GJA10Q969M2 543 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 LENG9Q96B70 501 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 MAP7D2Q96T17 732 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 GAS2L1Q99501 681 aaPredicted RBP12.25□□□□□ -0.45
CLIP3-203ENST00000586457 KIF2CQ99661 725 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 IFIH1Q9BYX4 1025 aaKnown RBP12.25□□□□□ -0.45
CLIP3-203ENST00000586457 UNC45AQ9H3U1 944 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 MTMR10Q9NXD2 777 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 NOL7Q9UMY1 257 aaKnown RBP12.25□□□□□ -0.45
CLIP3-203ENST00000586457 PCDHA12Q9UN75 941 aa12.25□□□□□ -0.45
CLIP3-203ENST00000586457 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.25□□□□□ -0.45
CLIP3-203ENST00000586457 TRIP12Q14669 1992 aaPredicted RBP12.25□□□□□ -0.45
CLIP3-203ENST00000586457 SMIM35A0A1B0GVV1 85 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 MBLAC1A4D2B0 266 aaPredicted RBP12.24□□□□□ -0.45
CLIP3-203ENST00000586457 DDX11L8A8MPP1 907 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 PSMD10O75832 226 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 OATP04181 439 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 PBX2P40425 430 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 TBC1D8BQ0IIM8 1120 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 CALCRLQ16602 461 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 MARCH8Q5T0T0 291 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 MCTP1Q6DN14 999 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 NCAPH2Q6IBW4 605 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 RPAINQ86UA6 219 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 HERC6Q8IVU3 1022 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 MYOCDQ8IZQ8 938 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 CCDC43Q96MW1 224 aaKnown RBP12.24□□□□□ -0.45
CLIP3-203ENST00000586457 TBC1D32Q96NH3 1257 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 SCLT1Q96NL6 688 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 NKX2-4Q9H2Z4 354 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 SUGCTQ9HAC7 445 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 SEPT9Q9UHD8 586 aaPredicted RBP12.24□□□□□ -0.45
CLIP3-203ENST00000586457 CDY2AQ9Y6F7 541 aa12.24□□□□□ -0.45
CLIP3-203ENST00000586457 SLC37A4O43826 429 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 NEMFO60524 1076 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 UPP2O95045 317 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 CHRNA1P02708 482 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 GHRP10912 638 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 FOSL2P15408 326 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 TXKP42681 527 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 WDR5P61964 334 aaKnown RBP12.23□□□□□ -0.45
CLIP3-203ENST00000586457 PSMC5P62195 406 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 PRKCEQ02156 737 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 PLEKHG4Q58EX7 1191 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 XKR3Q5GH77 459 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 FAM26DQ5JW98 314 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 EFCAB12Q6NXP0 572 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 FAM117BQ6P1L5 589 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 OTUD6AQ7L8S5 288 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 EXOC8Q8IYI6 725 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 ZNF710Q8N1W2 664 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 FBXO18Q8NFZ0 1043 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 ETNPPLQ8TBG4 499 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 MBOAT7Q96N66 472 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 CDX2Q99626 313 aaPredicted RBP12.23□□□□□ -0.45
CLIP3-203ENST00000586457 JPH2Q9BR39 696 aaPredicted RBP12.23□□□□□ -0.45
CLIP3-203ENST00000586457 CELF4Q9BZC1 486 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms