RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	LCHN	A4D1U4	455 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595		A6NNZ2	444 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	NOTO	A8MTQ0	251 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	NFIB	O00712	420 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	AURKA	O14965	403 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	KRT37	O76014	449 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	TMEM253	P0C7T8	217 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	PLS3	P13797	630 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	IFNGR1	P15260	489 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	SLC9A1	P19634	815 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	HAL	P42357	657 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	GALK1	P51570	392 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	USP14	P54578	494 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	ADCY1	Q08828	1119 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	CHAF1A	Q13111	956 aa	Predicted RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	ZNF267	Q14586	743 aa	Predicted RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	ACAP2	Q15057	778 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	TMEM95	Q3KNT9	176 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	IFIT1B	Q5T764	474 aa	Known RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	ZPBP2	Q6X784	338 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	TOGARAM2	Q6ZUX3	1019 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	CILP2	Q8IUL8	1156 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	ENAH	Q8N8S7	591 aa	Predicted RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	RCBTB1	Q8NDN9	531 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	TTC17	Q96AE7	1141 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	INTS4	Q96HW7	963 aa	Known RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	MAP6	Q96JE9	813 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	NAP1L4	Q99733	375 aa	Known RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	ALG1	Q9BT22	464 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	PLCB1	Q9NQ66	1216 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	PPARGC1A	Q9UBK2	798 aa	Known RBP	6.09	□□□□□ -1.43
SS18-223	ENST00000583595	MRFAP1	Q9Y605	127 aa		6.09	□□□□□ -1.43
SS18-223	ENST00000583595	PIP5K1C	O60331	668 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	USP2	O75604	605 aa	Predicted RBP	6.08	□□□□□ -1.44
SS18-223	ENST00000583595	HSPA6	P17066	643 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	CD53	P19397	219 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	LTBR	P36941	435 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	ST5	P78524	1137 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	LLGL1	Q15334	1064 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	TERF2	Q15554	542 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	SLC14A2	Q15849	920 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	INF2	Q27J81	1249 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	RRP12	Q5JTH9	1297 aa	Known RBP	6.08	□□□□□ -1.44
SS18-223	ENST00000583595	ANO1	Q5XXA6	986 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	C1orf228	Q6PIY5	440 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	CRTC3	Q6UUV7	619 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	C16orf59	Q7L2K0	433 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	SRL	Q86TD4	932 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	RASSF3	Q86WH2	238 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	IRF2BP1	Q8IU81	584 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	SIRT2	Q8IXJ6	389 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	PAF1	Q8N7H5	531 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	LMBR1	Q8WVP7	490 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	KCNN1	Q92952	543 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	FBXW5	Q969U6	566 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	SHISA4	Q96DD7	197 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	TEKT5	Q96M29	485 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	TOX2	Q96NM4	488 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	CATSPERZ	Q9NTU4	200 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	PRR13	Q9NZ81	148 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	FNIP2	Q9P278	1114 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	CBLC	Q9ULV8	474 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	NOC2L	Q9Y3T9	749 aa	Known RBP	6.08	□□□□□ -1.44
SS18-223	ENST00000583595	PCDHA2	Q9Y5H9	948 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	BACE2	Q9Y5Z0	518 aa		6.08	□□□□□ -1.44
SS18-223	ENST00000583595	RB1CC1	Q8TDY2	1594 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	TRIM75P	A6NK02	468 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	ETV2	O00321	342 aa	Predicted RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	ZBTB48	P10074	688 aa	Predicted RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	KIR2DL1	P43626	348 aa	Predicted RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	KIR2DL2	P43627	348 aa	Predicted RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	KRT85	P78386	507 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	LMOD3	Q0VAK6	560 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	PDCD1	Q15116	288 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	FAM47C	Q5HY64	1035 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	CWF19L1	Q69YN2	538 aa	Known RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	ATG14	Q6ZNE5	492 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	CEP128	Q6ZU80	1094 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	CHST15	Q7LFX5	561 aa	Predicted RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	ZNF605	Q86T29	641 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	OSTM1	Q86WC4	334 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	ANKRD42	Q8N9B4	389 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	TGFBRAP1	Q8WUH2	860 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	JADE3	Q92613	823 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	GJA10	Q969M2	543 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	HHIPL1	Q96JK4	782 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	TNIP3	Q96KP6	325 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	TAAR9	Q96RI9	348 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	NUP88	Q99567	741 aa	Predicted RBP	6.07	□□□□□ -1.44
SS18-223	ENST00000583595	KCNJ15	Q99712	375 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	C1orf112	Q9NSG2	853 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	KLHL11	Q9NVR0	708 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	INVS	Q9Y283	1065 aa		6.07	□□□□□ -1.44
SS18-223	ENST00000583595	KLRG2	A4D1S0	409 aa	Predicted RBP	6.06	□□□□□ -1.44
SS18-223	ENST00000583595	KCNK3	O14649	394 aa		6.06	□□□□□ -1.44
SS18-223	ENST00000583595	NBN	O60934	754 aa		6.06	□□□□□ -1.44
SS18-223	ENST00000583595	EFEMP2	O95967	443 aa		6.06	□□□□□ -1.44
SS18-223	ENST00000583595	GSN	P06396	782 aa		6.06	□□□□□ -1.44
SS18-223	ENST00000583595	VCAM1	P19320	739 aa		6.06	□□□□□ -1.44
SS18-223	ENST00000583595	CFP	P27918	469 aa		6.06	□□□□□ -1.44

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