RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TCF7P36402 384 aaPredicted RBP17.01■□□□□ 0.31
SS18-215ENST00000580642 STAT5BP51692 787 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 CUL4BQ13620 913 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 MORC3Q14149 939 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 CCL14Q16627 93 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 SMARCAD1Q9H4L7 1026 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 NRBP2Q9NSY0 501 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 WBP1LQ9NX94 342 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 ODF2LQ9ULJ1 636 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 GABRQQ9UN88 632 aa17.01■□□□□ 0.31
SS18-215ENST00000580642 FRMD3A2A2Y4 597 aa17■□□□□ 0.31
SS18-215ENST00000580642 ARHGEF35A5YM69 484 aa17■□□□□ 0.31
SS18-215ENST00000580642 PRR29P0C7W0 189 aa17■□□□□ 0.31
SS18-215ENST00000580642 SMPD1P17405 629 aa17■□□□□ 0.31
SS18-215ENST00000580642 CYP2C19P33261 490 aa17■□□□□ 0.31
SS18-215ENST00000580642 RARRES1P49788 294 aa17■□□□□ 0.31
SS18-215ENST00000580642 PSMC6P62333 389 aa17■□□□□ 0.31
SS18-215ENST00000580642 NKX3-2P78367 333 aa17■□□□□ 0.31
SS18-215ENST00000580642 GSE1Q14687 1217 aa17■□□□□ 0.31
SS18-215ENST00000580642 HSDL1Q3SXM5 330 aa17■□□□□ 0.31
SS18-215ENST00000580642 COBLL1Q53SF7 1204 aa17■□□□□ 0.31
SS18-215ENST00000580642 BRDTQ58F21 947 aaPredicted RBP17■□□□□ 0.31
SS18-215ENST00000580642 GPBP1Q86WP2 473 aa17■□□□□ 0.31
SS18-215ENST00000580642 CCDC60Q8IWA6 550 aaPredicted RBP17■□□□□ 0.31
SS18-215ENST00000580642 CCDC65Q8IXS2 484 aa17■□□□□ 0.31
SS18-215ENST00000580642 GRAMD1CQ8IYS0 662 aa17■□□□□ 0.31
SS18-215ENST00000580642 CD99L2Q8TCZ2 262 aa17■□□□□ 0.31
SS18-215ENST00000580642 ZNF296Q8WUU4 475 aaPredicted RBP17■□□□□ 0.31
SS18-215ENST00000580642 DDX12PQ92771 950 aa17■□□□□ 0.31
SS18-215ENST00000580642 BPIFA3Q9BQP9 254 aa17■□□□□ 0.31
SS18-215ENST00000580642 NIFKQ9BYG3 293 aaKnown RBP17■□□□□ 0.31
SS18-215ENST00000580642 WRAP73Q9P2S5 460 aaPredicted RBP17■□□□□ 0.31
SS18-215ENST00000580642 KCNG1Q9UIX4 513 aa17■□□□□ 0.31
SS18-215ENST00000580642 MAN1B1Q9UKM7 699 aa17■□□□□ 0.31
SS18-215ENST00000580642 GNEQ9Y223 722 aaKnown RBP17■□□□□ 0.31
SS18-215ENST00000580642 A6NJR5 290 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 KPNA6O60684 536 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 DUSP11O75319 330 aaKnown RBP16.99■□□□□ 0.31
SS18-215ENST00000580642 STBD1O95210 358 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 HMGCRP04035 888 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 OATP04181 439 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 SSBP05455 408 aaKnown RBP eCLIP16.99■□□□□ 0.31
SS18-215ENST00000580642 CYBAP13498 195 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 GAP43P17677 238 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 ASIC1P78348 528 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 ZNF658Q5TYW1 1059 aaPredicted RBP16.99■□□□□ 0.31
SS18-215ENST00000580642 RINT1Q6NUQ1 792 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 C1orf186Q6ZWK4 172 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 SLAIN1Q8ND83 568 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 PIGOQ8TEQ8 1089 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 TRIB2Q92519 343 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 DNAJC19Q96DA6 116 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 CCDC43Q96MW1 224 aaKnown RBP16.99■□□□□ 0.31
SS18-215ENST00000580642 BCAS3Q9H6U6 928 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 ERAP1Q9NZ08 941 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 SEL1LQ9UBV2 794 aa16.99■□□□□ 0.31
SS18-215ENST00000580642 SEPT4O43236 478 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 KLRC4O43908 158 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 ZNF862O60290 1169 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 KRT18P05783 430 aaKnown RBP16.98■□□□□ 0.31
SS18-215ENST00000580642 SCP2P22307 547 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 CPT1AP50416 773 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 PRKCEQ02156 737 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 SP4Q02446 784 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 EHHADHQ08426 723 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 UGCGQ16739 394 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 DGKDQ16760 1214 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 ARSHQ5FYA8 562 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 DNAJC5GQ8N7S2 189 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 OR6J1Q8NGC5 347 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 RAET1EQ8TD07 263 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 BBXQ8WY36 941 aaPredicted RBP16.98■□□□□ 0.31
SS18-215ENST00000580642 STAMQ92783 540 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 AP5M1Q9H0R1 490 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 BLZF1Q9H2G9 400 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 C17orf75Q9HAS0 396 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 EXOC1Q9NV70 894 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 COL4A3BPQ9Y5P4 624 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 LOXHD1Q8IVV2 1947 aa16.98■□□□□ 0.31
SS18-215ENST00000580642 ADCY3O60266 1144 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 DGAT1O75907 488 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 KIF20AO95235 890 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 ERCC5P28715 1186 aaPredicted RBP16.97■□□□□ 0.31
SS18-215ENST00000580642 RFC5P40937 340 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 GIT2Q14161 759 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 KMT5BQ4FZB7 885 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 MAP3K21Q5TCX8 1036 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 PADI6Q6TGC4 694 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 ANO5Q75V66 913 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 SLC17A8Q8NDX2 589 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 MCPH1Q8NEM0 835 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 FAM200AQ8TCP9 573 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 ATP8B4Q8TF62 1192 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 GLG1Q92896 1179 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 PCYT2Q99447 389 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 JPH2Q9BR39 696 aaPredicted RBP16.97■□□□□ 0.31
SS18-215ENST00000580642 ZNF215Q9UL58 517 aaPredicted RBP16.97■□□□□ 0.31
SS18-215ENST00000580642 DOCK3Q8IZD9 2030 aa16.97■□□□□ 0.31
SS18-215ENST00000580642 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.96■□□□□ 0.31
SS18-215ENST00000580642 FSD2A1L4K1 749 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms