RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CXXC1Q9P0U4 656 aaPredicted RBP21.97■■□□□ 1.11
SS18-209ENST00000578595 SLC4A7Q9Y6M7 1214 aa21.97■■□□□ 1.11
SS18-209ENST00000578595 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.96■■□□□ 1.11
SS18-209ENST00000578595 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.96■■□□□ 1.11
SS18-209ENST00000578595 FBXO18Q8NFZ0 1043 aa21.96■■□□□ 1.11
SS18-209ENST00000578595 FAM167AQ96KS9 214 aa21.96■■□□□ 1.11
SS18-209ENST00000578595 SMC3Q9UQE7 1217 aa21.96■■□□□ 1.11
SS18-209ENST00000578595 IGSF9BQ9UPX0 1349 aa21.96■■□□□ 1.11
SS18-209ENST00000578595 LAMA3Q16787 3333 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 GRXCR1A8MXD5 290 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 M0QZ92 97 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 NBNO60934 754 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 CAND2O75155 1236 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 GJB2P29033 226 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 KCNJ6P48051 423 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 ADAM17P78536 824 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 SMAD3P84022 425 aaKnown RBP21.95■■□□□ 1.1
SS18-209ENST00000578595 PRKCEQ02156 737 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 CALCRLQ16602 461 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 MCTP1Q6DN14 999 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 NCAPH2Q6IBW4 605 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 FAM109BQ6ICB4 259 aaPredicted RBP21.95■■□□□ 1.1
SS18-209ENST00000578595 CNKSR3Q6P9H4 555 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 BBXQ8WY36 941 aaPredicted RBP21.95■■□□□ 1.1
SS18-209ENST00000578595 FAM20AQ96MK3 541 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.95■■□□□ 1.1
SS18-209ENST00000578595 MAFBQ9Y5Q3 323 aaPredicted RBP21.95■■□□□ 1.1
SS18-209ENST00000578595 COL1A2P08123 1366 aa21.95■■□□□ 1.1
SS18-209ENST00000578595 ARID2Q68CP9 1835 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 H3BQV1 296 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 NEMFO60524 1076 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 UGCGQ16739 394 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 ZNF484Q5JVG2 852 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 MARCH8Q5T0T0 291 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 ZNF697Q5TEC3 545 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 Q7L0L9 218 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 SLFN12Q8IYM2 578 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 RDM1Q8NG50 284 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 FAM161BQ96MY7 647 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 FOXP1Q9H334 677 aaPredicted RBP21.94■■□□□ 1.1
SS18-209ENST00000578595 KCNMB3Q9NPA1 279 aa21.94■■□□□ 1.1
SS18-209ENST00000578595 SEPT9Q9UHD8 586 aaPredicted RBP21.94■■□□□ 1.1
SS18-209ENST00000578595 NOL7Q9UMY1 257 aaKnown RBP21.94■■□□□ 1.1
SS18-209ENST00000578595 MBLAC1A4D2B0 266 aaPredicted RBP21.93■■□□□ 1.1
SS18-209ENST00000578595 RBAK-RBAKDNI3L0D1 243 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 TBX3O15119 743 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 OATP04181 439 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 KLRC1P26715 233 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 MCM7P33993 719 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 TMEM62Q0P6H9 643 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 MBTPS1Q14703 1052 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 MTHFD1LQ6UB35 978 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 DEFB123Q8N688 67 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 BANK1Q8NDB2 785 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 NRBP2Q9NSY0 501 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 CEP131Q9UPN4 1083 aa21.93■■□□□ 1.1
SS18-209ENST00000578595 ATP2A2P16615 1042 aaKnown RBP21.92■■□□□ 1.1
SS18-209ENST00000578595 ATP4AP20648 1035 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 RASIP1Q5U651 963 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 TRAF7Q6Q0C0 670 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 NOSTRINQ8IVI9 506 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 METTL13Q8N6R0 699 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 VWCEQ96DN2 955 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 MSRAQ9UJ68 235 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 GINS2Q9Y248 185 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 CDY2AQ9Y6F7 541 aa21.92■■□□□ 1.1
SS18-209ENST00000578595 WNT7AO00755 349 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 BAIAP3O94812 1187 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 RPLP2P05387 115 aaKnown RBP21.91■■□□□ 1.1
SS18-209ENST00000578595 GHRP10912 638 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 DNAJB2P25686 324 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 MRPS6P82932 125 aaKnown RBP21.91■■□□□ 1.1
SS18-209ENST00000578595 IKBKEQ14164 716 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 SEPT8Q92599 483 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 HAS1Q92839 578 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 VAV3Q9UKW4 847 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 PCDHA2Q9Y5H9 948 aa21.91■■□□□ 1.1
SS18-209ENST00000578595 SMIM35A0A1B0GVV1 85 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 KIF28PB7ZC32 967 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 ZNF862O60290 1169 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 CXCL10P02778 98 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 TXKP42681 527 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 PPP2R5CQ13362 524 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 GPNMBQ14956 572 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 MTERF2Q49AM1 385 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 TTC38Q5R3I4 469 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 IER5Q5VY09 327 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 DBF4BQ8NFT6 615 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 PPP1R16BQ96T49 567 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 SLC9A7Q96T83 725 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 PCDHA12Q9UN75 941 aa21.9■■□□□ 1.1
SS18-209ENST00000578595 DDX11L8A8MPP1 907 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 EML1O00423 815 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 PBX2P40425 430 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 RABGGTBP53611 331 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 PSMC5P62195 406 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 ZNF174Q15697 407 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 RAB30Q15771 203 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 GPR153Q6NV75 609 aa21.89■■□□□ 1.09
SS18-209ENST00000578595 TIFAQ96CG3 184 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms