RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 HERVK_113Q902F9 699 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 RNPC3Q96LT9 517 aaKnown RBP21.79■■□□□ 1.08
SS18-208ENST00000577751 SMC3Q9UQE7 1217 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 COL1A2P08123 1366 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 ZBTB42B2RXF5 422 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 ZNF862O60290 1169 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 CXCL10P02778 98 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 IGBP1P78318 339 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 FAM26DQ5JW98 314 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 RUFY4Q6ZNE9 571 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 DEFB128Q7Z7B8 93 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 PCDHA2Q9Y5H9 948 aa21.78■■□□□ 1.08
SS18-208ENST00000577751 RSPH10B2B2RC85 870 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 EML1O00423 815 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 NBNO60934 754 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 BAG4O95429 457 aaKnown RBP21.77■■□□□ 1.08
SS18-208ENST00000577751 RSPH10BP0C881 870 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 SPIRE1Q08AE8 756 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 MBTPS1Q14703 1052 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 UGCGQ16739 394 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 ZNF484Q5JVG2 852 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 TRAPPC12Q8WVT3 735 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 MTMR9Q96QG7 549 aa21.77■■□□□ 1.08
SS18-208ENST00000577751 NEMFO60524 1076 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 TRAPPC10P48553 1259 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 ORC2Q13416 577 aaPredicted RBP21.76■■□□□ 1.07
SS18-208ENST00000577751 CALCRLQ16602 461 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 MTHFD1LQ6UB35 978 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 OTOP2Q7RTS6 562 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 CKAP2LQ8IYA6 745 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 SNX21Q969T3 373 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 ZBTB10Q96DT7 871 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 LRCH3Q96II8 777 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 FAM167AQ96KS9 214 aa21.76■■□□□ 1.07
SS18-208ENST00000577751 MARCH6O60337 910 aa21.75■■□□□ 1.07
SS18-208ENST00000577751 STBD1O95210 358 aa21.75■■□□□ 1.07
SS18-208ENST00000577751 RPLP2P05387 115 aaKnown RBP21.75■■□□□ 1.07
SS18-208ENST00000577751 GNL2Q13823 731 aaKnown RBP21.75■■□□□ 1.07
SS18-208ENST00000577751 DNAJB3Q8WWF6 145 aa21.75■■□□□ 1.07
SS18-208ENST00000577751 TMEM60Q9H2L4 133 aa21.75■■□□□ 1.07
SS18-208ENST00000577751 CXXC1Q9P0U4 656 aaPredicted RBP21.75■■□□□ 1.07
SS18-208ENST00000577751 PCDHA12Q9UN75 941 aa21.75■■□□□ 1.07
SS18-208ENST00000577751 SIP14410 1827 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 SMIM35A0A1B0GVV1 85 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 K7ELQ4 463 aaPredicted RBP21.74■■□□□ 1.07
SS18-208ENST00000577751 OATP04181 439 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 ATP2B1P20020 1258 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 KLRC1P26715 233 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 MCM7P33993 719 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 PRKCEQ02156 737 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 MGAT3Q09327 533 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 GPR153Q6NV75 609 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 INTS4Q96HW7 963 aaKnown RBP21.74■■□□□ 1.07
SS18-208ENST00000577751 FTOQ9C0B1 505 aaKnown RBP eCLIP21.74■■□□□ 1.07
SS18-208ENST00000577751 MTIF3Q9H2K0 278 aaKnown RBP21.74■■□□□ 1.07
SS18-208ENST00000577751 NRBP2Q9NSY0 501 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 CEP131Q9UPN4 1083 aa21.74■■□□□ 1.07
SS18-208ENST00000577751 EVPLQ92817 2033 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 CHRNA1P02708 482 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 TOB1P50616 345 aaPredicted RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 SMAD3P84022 425 aaKnown RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 EPHA7Q15375 998 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 ZNF174Q15697 407 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 TTC38Q5R3I4 469 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 LARP1BQ659C4 914 aaKnown RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 RSPH3Q86UC2 560 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 TTC12Q9H892 705 aaPredicted RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 NOL7Q9UMY1 257 aaKnown RBP21.73■■□□□ 1.07
SS18-208ENST00000577751 SZT2Q5T011 3432 aa21.73■■□□□ 1.07
SS18-208ENST00000577751 H3BQV1 296 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 C22orf31O95567 290 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 P4HBP07237 508 aaKnown RBP21.72■■□□□ 1.07
SS18-208ENST00000577751 CTSHP09668 335 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 ACTN1P12814 892 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 TXKP42681 527 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 PSMC5P62195 406 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 TARBP2Q15633 366 aaKnown RBP21.72■■□□□ 1.07
SS18-208ENST00000577751 XKR3Q5GH77 459 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 CNKSR3Q6P9H4 555 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 TRMT1LQ7Z2T5 733 aaKnown RBP21.72■■□□□ 1.07
SS18-208ENST00000577751 NME8Q8N427 588 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 BANK1Q8NDB2 785 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 NIFKQ9BYG3 293 aaKnown RBP21.72■■□□□ 1.07
SS18-208ENST00000577751 OSBPL7Q9BZF2 842 aa21.72■■□□□ 1.07
SS18-208ENST00000577751 BAIAP3O94812 1187 aa21.71■■□□□ 1.07
SS18-208ENST00000577751 QARSP47897 775 aaKnown RBP21.71■■□□□ 1.07
SS18-208ENST00000577751 TCTN1Q2MV58 587 aa21.71■■□□□ 1.07
SS18-208ENST00000577751 PLEKHG4Q58EX7 1191 aa21.71■■□□□ 1.07
SS18-208ENST00000577751 C4orf32Q8N8J7 132 aa21.71■■□□□ 1.07
SS18-208ENST00000577751 LAMA2P24043 3122 aaKnown RBP21.7■■□□□ 1.06
SS18-208ENST00000577751 MAGEB2O15479 319 aa21.7■■□□□ 1.06
SS18-208ENST00000577751 DKC1O60832 514 aaKnown RBP eCLIP21.7■■□□□ 1.06
SS18-208ENST00000577751 MRPS6P82932 125 aaKnown RBP21.7■■□□□ 1.06
SS18-208ENST00000577751 IER5Q5VY09 327 aa21.7■■□□□ 1.06
SS18-208ENST00000577751 MCTP1Q6DN14 999 aa21.7■■□□□ 1.06
SS18-208ENST00000577751 NCAPH2Q6IBW4 605 aa21.7■■□□□ 1.06
SS18-208ENST00000577751 FAM109BQ6ICB4 259 aaPredicted RBP21.7■■□□□ 1.06
SS18-208ENST00000577751 KIAA0319LQ8IZA0 1049 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms