RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CCDC149Q6ZUS6 474 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 TMC7Q7Z402 723 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 TBC1D5Q92609 795 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 SUPT16HQ9Y5B9 1047 aaKnown RBP19.03■□□□□ 0.64
VPS53-218ENST00000575207 C2orf71A6NGG8 1288 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 LAMTOR5O43504 91 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 ARHGAP4P98171 946 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 NONOQ15233 471 aaKnown RBP eCLIP19.02■□□□□ 0.64
VPS53-218ENST00000575207 USP26Q9BXU7 913 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 ARHGEF3Q9NR81 526 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 TYW1Q9NV66 732 aaKnown RBP19.02■□□□□ 0.64
VPS53-218ENST00000575207 LRFN2Q9ULH4 789 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 SQORQ9Y6N5 450 aa19.02■□□□□ 0.64
VPS53-218ENST00000575207 FNDC1Q4ZHG4 1894 aaPredicted RBP19.01■□□□□ 0.63
VPS53-218ENST00000575207 ITPR1Q14643 2758 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 SORBS3O60504 671 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 NR3C2P08235 984 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 LAG3P18627 525 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 KCNA4P22459 653 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 NOVP48745 357 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 ERC1Q8IUD2 1116 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 CWH43Q9H720 699 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 EPB41L4AQ9HCS5 686 aaPredicted RBP19.01■□□□□ 0.63
VPS53-218ENST00000575207 IL17RBQ9NRM6 502 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 HCSTQ9UBK5 93 aa19.01■□□□□ 0.63
VPS53-218ENST00000575207 NRCAMQ92823 1304 aa19■□□□□ 0.63
VPS53-218ENST00000575207 SRRM3A6NNA2 597 aaPredicted RBP19■□□□□ 0.63
VPS53-218ENST00000575207 TBKBP1A7MCY6 615 aa19■□□□□ 0.63
VPS53-218ENST00000575207 SP2Q02086 613 aa19■□□□□ 0.63
VPS53-218ENST00000575207 CSTF1Q05048 431 aaKnown RBP19■□□□□ 0.63
VPS53-218ENST00000575207 SMC1AQ14683 1233 aaKnown RBP19■□□□□ 0.63
VPS53-218ENST00000575207 RSPH3Q86UC2 560 aa19■□□□□ 0.63
VPS53-218ENST00000575207 SLC44A3Q8N4M1 653 aa19■□□□□ 0.63
VPS53-218ENST00000575207 FEZF2Q8TBJ5 459 aa19■□□□□ 0.63
VPS53-218ENST00000575207 GPR152Q8TDT2 470 aa19■□□□□ 0.63
VPS53-218ENST00000575207 SPATA6Q9NWH7 488 aaPredicted RBP19■□□□□ 0.63
VPS53-218ENST00000575207 MTMR7Q9Y216 660 aa19■□□□□ 0.63
VPS53-218ENST00000575207 CDY2AQ9Y6F7 541 aa19■□□□□ 0.63
VPS53-218ENST00000575207 TMEM8BA6NDV4 472 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 LRRN2O75325 713 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 TGFB3P10600 412 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 UBA1P22314 1058 aaKnown RBP18.99■□□□□ 0.63
VPS53-218ENST00000575207 SARSP49591 514 aaKnown RBP18.99■□□□□ 0.63
VPS53-218ENST00000575207 STARD6P59095 220 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 ARHGEF16Q5VV41 709 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 GPR149Q86SP6 731 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 RSAD2Q8WXG1 361 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 FOXQ1Q9C009 403 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 MLXIPQ9HAP2 919 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 PCDHB7Q9Y5E2 793 aa18.99■□□□□ 0.63
VPS53-218ENST00000575207 EIF2AK2P19525 551 aaKnown RBP18.98■□□□□ 0.63
VPS53-218ENST00000575207 ZSCAN25Q6NSZ9 544 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 TMC5Q6UXY8 1006 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 NXPE3Q969Y0 559 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 BCO2Q9BYV7 579 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 IL1RAPL2Q9NP60 686 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 PADI3Q9ULW8 664 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 CCDC171Q6TFL3 1326 aa18.98■□□□□ 0.63
VPS53-218ENST00000575207 LAMA5O15230 3695 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 TM4SF5O14894 197 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 NMT2O60551 498 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 TDO2P48775 406 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 KRT17Q04695 432 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 FAM102BQ5T8I3 360 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 LAIR1Q6GTX8 287 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 DCLRE1AQ6PJP8 1040 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 PRR23CQ6ZRP0 262 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 TMEM121BQ9BXQ6 578 aaPredicted RBP18.97■□□□□ 0.63
VPS53-218ENST00000575207 GPCPD1Q9NPB8 672 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 PXMP2Q9NR77 195 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 SEMA4GQ9NTN9 838 aa18.97■□□□□ 0.63
VPS53-218ENST00000575207 GDF9O60383 454 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 N4BP1O75113 896 aaKnown RBP18.96■□□□□ 0.63
VPS53-218ENST00000575207 RETP07949 1114 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 TRIM27P14373 513 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 PPM1AP35813 382 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 USH1GQ495M9 461 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 FAM43BQ6ZT52 329 aaPredicted RBP18.96■□□□□ 0.63
VPS53-218ENST00000575207 BOLA2Q9H3K6 86 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 TMX1Q9H3N1 280 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 EXOC6BQ9Y2D4 811 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 KAT6AQ92794 2004 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 FRMPD2Q68DX3 1309 aaPredicted RBP18.96■□□□□ 0.63
VPS53-218ENST00000575207 MYH7P12883 1935 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 LOXHD1Q8IVV2 1947 aa18.96■□□□□ 0.63
VPS53-218ENST00000575207 PATJQ8NI35 1801 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 EPCAMP16422 314 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 PDE4AP27815 886 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 MRPS6P82932 125 aaKnown RBP18.95■□□□□ 0.62
VPS53-218ENST00000575207 CSRP2Q16527 193 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 LETM2Q2VYF4 491 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 IL31Q6EBC2 164 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 KCNT2Q6UVM3 1135 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 DNAJB3Q8WWF6 145 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 MAP4K1Q92918 833 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 SLC2A4RGQ9NR83 387 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 ZNF215Q9UL58 517 aaPredicted RBP18.95■□□□□ 0.62
VPS53-218ENST00000575207 IGSF10Q6WRI0 2623 aa18.95■□□□□ 0.62
VPS53-218ENST00000575207 MBLAC1A4D2B0 266 aaPredicted RBP18.94■□□□□ 0.62
VPS53-218ENST00000575207 FOXD2O60548 495 aaPredicted RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms