RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 PCDHA7Q9UN72 937 aa20.39■□□□□ 0.85
CCDC40-213ENST00000574933 MED24O75448 989 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 XRCC6P12956 609 aaKnown RBP eCLIP20.38■□□□□ 0.85
CCDC40-213ENST00000574933 SOX10P56693 466 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 PSMC6P62333 389 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 KRT79Q5XKE5 535 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 SLC39A5Q6ZMH5 540 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 CATSPER3Q86XQ3 398 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 BANK1Q8NDB2 785 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 CLIC6Q96NY7 704 aa20.38■□□□□ 0.85
CCDC40-213ENST00000574933 WRAP73Q9P2S5 460 aaPredicted RBP20.38■□□□□ 0.85
CCDC40-213ENST00000574933 COL1A2P08123 1366 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 POTEB3A0JP26 581 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 PP2D1A8MPX8 630 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 ARVCFO00192 962 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 HBP1O60381 514 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 OATP04181 439 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 CDC25AP30304 524 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 PRKCEQ02156 737 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 CYP4A11Q02928 519 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 CTTNQ14247 550 aaKnown RBP20.37■□□□□ 0.85
CCDC40-213ENST00000574933 XKR3Q5GH77 459 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 POTEBQ6S5H4 581 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 SNX29Q8TEQ0 813 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 NIFKQ9BYG3 293 aaKnown RBP20.37■□□□□ 0.85
CCDC40-213ENST00000574933 MYH11P35749 1972 aa20.37■□□□□ 0.85
CCDC40-213ENST00000574933 KDM3AQ9Y4C1 1321 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 CCT6AP40227 531 aaKnown RBP20.36■□□□□ 0.85
CCDC40-213ENST00000574933 ADAM17P78536 824 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 ADALQ6DHV7 355 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 TPH2Q8IWU9 490 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 VTI1AQ96AJ9 217 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 NRBP2Q9NSY0 501 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 HDAC6Q9UBN7 1215 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 GTF2IRD1Q9UHL9 959 aa20.36■□□□□ 0.85
CCDC40-213ENST00000574933 NRCAMQ92823 1304 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 SMIM10L2AP0DMW4 78 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 SMIM10L2BP0DMW5 78 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 MARK3P27448 753 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 UBA7P41226 1012 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 ME1P48163 572 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 TARBP2Q15633 366 aaKnown RBP20.35■□□□□ 0.85
CCDC40-213ENST00000574933 ECM1Q16610 540 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 ZNF484Q5JVG2 852 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 USP49Q70CQ1 688 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 ANKRD33Q7Z3H0 272 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 CABP7Q86V35 215 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 SYMPKQ92797 1274 aaKnown RBP20.35■□□□□ 0.85
CCDC40-213ENST00000574933 TOX2Q96NM4 488 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 PNMA5Q96PV4 448 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 NT5C3AQ9H0P0 336 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 ANKEF1Q9NU02 776 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 PPME1Q9Y570 386 aa20.35■□□□□ 0.85
CCDC40-213ENST00000574933 MROH7Q68CQ1 1323 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 RRN3P2A6NIE6 340 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 ZBTB42B2RXF5 422 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 INSRRP14616 1297 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 GRB10Q13322 594 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 TMEM119Q4V9L6 283 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 SHC4Q6S5L8 630 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 ANO5Q75V66 913 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 C7orf31Q8N865 590 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 TMEM87AQ8NBN3 555 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 EPSTI1Q96J88 318 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 NACC1Q96RE7 527 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 CEP89Q96ST8 783 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 GDPD2Q9HCC8 539 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 TRPC6Q9Y210 931 aa20.34■□□□□ 0.85
CCDC40-213ENST00000574933 DNAH12Q6ZR08 3092 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 A0A1W2PQ27 194 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 A0A1W2PQ64 194 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 A0A1W2PQD8 194 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 MBLAC1A4D2B0 266 aaPredicted RBP20.33■□□□□ 0.85
CCDC40-213ENST00000574933 YWHABP31946 246 aaKnown RBP20.33■□□□□ 0.85
CCDC40-213ENST00000574933 PPFIA1Q13136 1202 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 SPECC1Q5M775 1068 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 RESP18Q5W5W9 173 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 POTEGQ6S5H5 508 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 OTUD6AQ7L8S5 288 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 CKAP2LQ8IYA6 745 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 LMBR1Q8WVP7 490 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 CALML4Q96GE6 196 aa20.33■□□□□ 0.85
CCDC40-213ENST00000574933 DBR1Q9UK59 544 aaKnown RBP20.33■□□□□ 0.85
CCDC40-213ENST00000574933 FAM237AA0A1B0GTK4 181 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 DDX11L8A8MPP1 907 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 CD4P01730 458 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 GNAT1P11488 350 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 CMA1P23946 247 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 HIC1Q14526 733 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 GRIK4Q16099 956 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 CSPP1Q1MSJ5 1256 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 LRRC26Q2I0M4 334 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 MARCH8Q5T0T0 291 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 GDF6Q6KF10 455 aaPredicted RBP20.32■□□□□ 0.84
CCDC40-213ENST00000574933 FAM126BQ8IXS8 530 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 CTAGE1Q96RT6 745 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 KIAA1024Q9UPX6 916 aa20.32■□□□□ 0.84
CCDC40-213ENST00000574933 C17orf102A2RUQ5 167 aa20.31■□□□□ 0.84
CCDC40-213ENST00000574933 TXLNAP40222 546 aa20.31■□□□□ 0.84
CCDC40-213ENST00000574933 ATN1P54259 1190 aaPredicted RBP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms