RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NT5C3AQ9H0P0 336 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 GDPD2Q9HCC8 539 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 TRPC6Q9Y210 931 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 LOXHD1Q8IVV2 1947 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 POTEB3A0JP26 581 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 CDC25AP30304 524 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 ITGA7Q13683 1181 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 PLCB4Q15147 1175 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 XKR3Q5GH77 459 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 HYIQ5T013 277 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 ADALQ6DHV7 355 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 POTEBQ6S5H4 581 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 SYMPKQ92797 1274 aaKnown RBP19.13■□□□□ 0.65
NUP88-210ENST00000574867 CALML4Q96GE6 196 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 PAWRQ96IZ0 340 aaKnown RBP19.13■□□□□ 0.65
NUP88-210ENST00000574867 CDK5RAP3Q96JB5 506 aa19.13■□□□□ 0.65
NUP88-210ENST00000574867 PSMC6P62333 389 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 PTPN11Q06124 597 aaPredicted RBP19.12■□□□□ 0.65
NUP88-210ENST00000574867 NBPF20Q3BBV1 942 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 UBE2Q1Q7Z7E8 422 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 SESTD1Q86VW0 696 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 C7orf31Q8N865 590 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 GBP4Q96PP9 640 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 NRBP2Q9NSY0 501 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 WRAP73Q9P2S5 460 aaPredicted RBP19.12■□□□□ 0.65
NUP88-210ENST00000574867 HBP1O60381 514 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 COL1A2P08123 1366 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 ATP4AP20648 1035 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 SOX10P56693 466 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 TMEM87AQ8NBN3 555 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 RASSF8Q8NHQ8 419 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 RNPEPQ9H4A4 650 aa19.12■□□□□ 0.65
NUP88-210ENST00000574867 YWHABP31946 246 aaKnown RBP19.11■□□□□ 0.65
NUP88-210ENST00000574867 CHMP4BP1P59074 171 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 SPECC1Q5M775 1068 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 POTEGQ6S5H5 508 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 OTUD6AQ7L8S5 288 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 SLC43A3Q8NBI5 491 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 EPSTI1Q96J88 318 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 NACC1Q96RE7 527 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 CCDC39Q9UFE4 941 aa19.11■□□□□ 0.65
NUP88-210ENST00000574867 GRIN2DO15399 1336 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 MROH7Q68CQ1 1323 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 NRCAMQ92823 1304 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 A0A1W2PQ27 194 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 A0A1W2PQ64 194 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 A0A1W2PQD8 194 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 SMIM10L2AP0DMW4 78 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 SMIM10L2BP0DMW5 78 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 PPFIA1Q13136 1202 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 C1orf53Q5VUE5 145 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 RESP18Q5W5W9 173 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 SHC4Q6S5L8 630 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 FAM13BQ9NYF5 915 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 SEPT9Q9UHD8 586 aaPredicted RBP19.1■□□□□ 0.65
NUP88-210ENST00000574867 PPME1Q9Y570 386 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 ARID2Q68CP9 1835 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 ARVCFO00192 962 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 XRCC6P12956 609 aaKnown RBP eCLIP19.1■□□□□ 0.65
NUP88-210ENST00000574867 HOXC8P31273 242 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 SNX17Q15036 470 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 TMEM119Q4V9L6 283 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 NIFKQ9BYG3 293 aaKnown RBP19.1■□□□□ 0.65
NUP88-210ENST00000574867 ANKEF1Q9NU02 776 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 DDX19AQ9NUU7 478 aaKnown RBP19.1■□□□□ 0.65
NUP88-210ENST00000574867 GTF2IRD1Q9UHL9 959 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 KIAA1024Q9UPX6 916 aa19.1■□□□□ 0.65
NUP88-210ENST00000574867 GOLGA6L4A6NEF3 574 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 RRN3P2A6NIE6 340 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 STBD1O95210 358 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 GNAT1P11488 350 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 CMA1P23946 247 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 ZRSR1Q15695 479 aaKnown RBP19.09■□□□□ 0.65
NUP88-210ENST00000574867 FAM47CQ5HY64 1035 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 ZNF484Q5JVG2 852 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 USP49Q70CQ1 688 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 ANO5Q75V66 913 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 CCDC43Q96MW1 224 aaKnown RBP19.09■□□□□ 0.65
NUP88-210ENST00000574867 HDAC6Q9UBN7 1215 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 C17orf102A2RUQ5 167 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 DDX11L8A8MPP1 907 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 INSRRP14616 1297 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 GRB10Q13322 594 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 KARSQ15046 597 aaKnown RBP19.09■□□□□ 0.65
NUP88-210ENST00000574867 GRIK4Q16099 956 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 ECM1Q16610 540 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 SLC39A5Q6ZMH5 540 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 PNMA5Q96PV4 448 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 DBR1Q9UK59 544 aaKnown RBP19.09■□□□□ 0.65
NUP88-210ENST00000574867 DNM3Q9UQ16 869 aa19.09■□□□□ 0.65
NUP88-210ENST00000574867 KAT6AQ92794 2004 aa19.08■□□□□ 0.65
NUP88-210ENST00000574867 TRMT1LQ7Z2T5 733 aaKnown RBP19.08■□□□□ 0.64
NUP88-210ENST00000574867 LMBR1Q8WVP7 490 aa19.08■□□□□ 0.64
NUP88-210ENST00000574867 PYM1Q9BRP8 204 aaKnown RBP19.08■□□□□ 0.64
NUP88-210ENST00000574867 PLCG1P19174 1290 aa19.07■□□□□ 0.64
NUP88-210ENST00000574867 CDK7P50613 346 aa19.07■□□□□ 0.64
NUP88-210ENST00000574867 CCDC73Q6ZRK6 1079 aa19.07■□□□□ 0.64
NUP88-210ENST00000574867 PIGOQ8TEQ8 1089 aa19.07■□□□□ 0.64
NUP88-210ENST00000574867 STK17AQ9UEE5 414 aa19.07■□□□□ 0.64
NUP88-210ENST00000574867 ATN1P54259 1190 aaPredicted RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms