RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 BDP1A6H8Y1 2624 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 KLF18A0A0U1RQI7 1052 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 SMIM35A0A1B0GVV1 85 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 POTEB3A0JP26 581 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 FAM86C2PA6NEL3 165 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 SMCO2A6NFE2 343 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 DDX39AO00148 427 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 GRM6O15303 877 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 DGKIO75912 1065 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 CSPG5O95196 566 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 MMP1P03956 469 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 HMGB1P09429 215 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 ARP10275 920 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 SREBF1P36956 1147 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 TMEM62Q0P6H9 643 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 COL9A3Q14050 684 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 CSPP1Q1MSJ5 1256 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 ODR4Q5SWX8 454 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 POTEBQ6S5H4 581 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 CMTR2Q8IYT2 770 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 NME8Q8N427 588 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 TRAPPC12Q8WVT3 735 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 KHSRPQ92945 711 aaKnown RBP eCLIP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 ZNF689Q96CS4 500 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 CELF4Q9BZC1 486 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 AGO3Q9H9G7 860 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 RC3H2Q9HBD1 1191 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 AGO4Q9HCK5 861 aaKnown RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 CD320Q9NPF0 282 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 RNF216Q9NWF9 866 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 BARHL2Q9NY43 387 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 PRKAG3Q9UGI9 489 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 V9GY48 417 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-210ENST00000573903 IGSF9BQ9UPX0 1349 aa13.88□□□□□ -0.19
CCDC40-210ENST00000573903 KIAA1671Q9BY89 1806 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 CCDC196A0A1B0GTZ2 297 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 STXBP3O00186 592 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 HBP1O60381 514 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 SCG2P13521 617 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 RCAN1P53805 252 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 KRT76Q01546 638 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 COL19A1Q14993 1142 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 NAALADL2Q58DX5 795 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 TYW1BQ6NUM6 668 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 MTHFD1LQ6UB35 978 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 FAM43BQ6ZT52 329 aaPredicted RBP13.87□□□□□ -0.19
CCDC40-210ENST00000573903 NIPA1Q7RTP0 329 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 CYP2W1Q8TAV3 490 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 CCDC12Q8WUD4 166 aaPredicted RBP13.87□□□□□ -0.19
CCDC40-210ENST00000573903 P2RX5Q93086 422 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 ZBTB10Q96DT7 871 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 TCEANC2Q96MN5 208 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 POP1Q99575 1024 aaKnown RBP13.87□□□□□ -0.19
CCDC40-210ENST00000573903 PADI3Q9ULW8 664 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 KDM3AQ9Y4C1 1321 aa13.87□□□□□ -0.19
CCDC40-210ENST00000573903 COL1A2P08123 1366 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 PRR33A8MZF0 331 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 MEIS1O00470 390 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 IBSPP21815 317 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-210ENST00000573903 NFX1Q12986 1120 aaKnown RBP13.86□□□□□ -0.19
CCDC40-210ENST00000573903 ITGB3BPQ13352 177 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-210ENST00000573903 PAN2Q504Q3 1202 aaKnown RBP13.86□□□□□ -0.19
CCDC40-210ENST00000573903 MCTP2Q6DN12 878 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 MIS18BP1Q6P0N0 1132 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 PLA2G4DQ86XP0 818 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 CKAP2LQ8IYA6 745 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 LINC01599Q8WXQ3 324 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 UPF3BQ9BZI7 483 aaKnown RBP13.86□□□□□ -0.19
CCDC40-210ENST00000573903 ZNF302Q9NR11 478 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 TMEM260Q9NX78 707 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 BRPF3Q9ULD4 1205 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 GINS2Q9Y248 185 aa13.86□□□□□ -0.19
CCDC40-210ENST00000573903 MRPL42Q9Y6G3 142 aaKnown RBP13.86□□□□□ -0.19
CCDC40-210ENST00000573903 DCXO43602 365 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 RPS6KA5O75582 802 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 ATG7O95352 703 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 LINC00271P0C7V0 271 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 KLRC1P26715 233 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 CLK2P49760 499 aaKnown RBP13.85□□□□□ -0.19
CCDC40-210ENST00000573903 NDUFV1P49821 464 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 METAP2P50579 478 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC40-210ENST00000573903 SETQ01105 290 aaPredicted RBP13.85□□□□□ -0.19
CCDC40-210ENST00000573903 EXOSC10Q01780 885 aaKnown RBP13.85□□□□□ -0.19
CCDC40-210ENST00000573903 FUT2Q10981 343 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 HYAL1Q12794 435 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 TSGA10IPQ3SY00 556 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 SPOUT1Q5T280 376 aaKnown RBP13.85□□□□□ -0.19
CCDC40-210ENST00000573903 JAKMIP3Q5VZ66 844 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 PDXDC2PQ6P474 469 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 ADHFE1Q8IWW8 467 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 ATP8B4Q8TF62 1192 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 UIMC1Q96RL1 719 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 IGFLR1Q9H665 355 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 C6orf50Q9HD87 102 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 ALG13Q9NP73 1137 aaKnown RBP13.85□□□□□ -0.19
CCDC40-210ENST00000573903 C11orf16Q9NQ32 467 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 PLAGL2Q9UPG8 496 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 PCDHB7Q9Y5E2 793 aa13.85□□□□□ -0.19
CCDC40-210ENST00000573903 MYH9P35579 1960 aaKnown RBP13.84□□□□□ -0.19
CCDC40-210ENST00000573903 DENND3A2RUS2 1198 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms