RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 BMP2KLQ5H9B9 411 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 TSHZ1Q6ZSZ6 1077 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 BANK1Q8NDB2 785 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 KCNB2Q92953 911 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 IL17RAQ96F46 866 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 NEK1Q96PY6 1258 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 C1QTNF1Q9BXJ1 281 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 TMX1Q9H3N1 280 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 AGO4Q9HCK5 861 aaKnown RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 JPH1Q9HDC5 661 aaPredicted RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 SLC9A2Q9UBY0 812 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 V9GY48 417 aaPredicted RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 ADGRA3Q8IWK6 1321 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 FAM86C2PA6NEL3 165 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 C19orf67A6NJJ6 358 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 FAM86B1E9PN63 330 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 MGEA5O60502 916 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 RB1P06400 928 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 FAM86B2P0C5J1 330 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 CPA1P15085 419 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 ADD1P35611 737 aaKnown RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 SREBF1P36956 1147 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 GATMP50440 423 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 NAPAP54920 295 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 TMEM62Q0P6H9 643 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 PKN1Q16512 942 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 RTN1Q16799 776 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 TIGD5Q53EQ6 642 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 CEP55Q53EZ4 464 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 PTCRAQ6ISU1 281 aaPredicted RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 PPP1R18Q6NYC8 613 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 ABHD15Q6UXT9 468 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 DHX32Q7L7V1 743 aaKnown RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 PLPPR4Q7Z2D5 763 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 CCDC60Q8IWA6 550 aaPredicted RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 FIBCD1Q8N539 461 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 TMEM40Q8WWA1 233 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 GLG1Q92896 1179 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 PABPC5Q96DU9 382 aaKnown RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 ANO3Q9BYT9 981 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 FAM49AQ9H0Q0 323 aaPredicted RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 NSUN3Q9H649 340 aaKnown RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 CDHR5Q9HBB8 845 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 RBM28Q9NW13 759 aaKnown RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 BARHL2Q9NY43 387 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 PADI3Q9ULW8 664 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 PCDHA2Q9Y5H9 948 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 MRPL42Q9Y6G3 142 aaKnown RBP7.68□□□□□ -1.18
VPS53-213ENST00000572334 SQORQ9Y6N5 450 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 IGSF9BQ9UPX0 1349 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 KDM3AQ9Y4C1 1321 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 NID2Q14112 1375 aa7.68□□□□□ -1.18
VPS53-213ENST00000572334 ZDBF2Q9HCK1 2354 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 SMIM35A0A1B0GVV1 85 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 SMCO2A6NFE2 343 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 RRN3P2A6NIE6 340 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 LINC01565O15544 149 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 ZBTB43O43298 467 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 TBX10O75333 385 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 FOSP01100 380 aaPredicted RBP7.67□□□□□ -1.18
VPS53-213ENST00000572334 CYP3A4P08684 503 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 CTNNB1P35222 781 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 PLA2G5P39877 138 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 STAT5BP51692 787 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 ADCY7P51828 1080 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 HYAL1Q12794 435 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 NTRK3Q16288 839 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 PTPROQ16827 1216 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 MTHFD1LQ6UB35 978 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 NIPA1Q7RTP0 329 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 TEX2Q8IWB9 1127 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 KIAA0319LQ8IZA0 1049 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 GJD3Q8N144 294 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 UIMC1Q96RL1 719 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 AGXT2Q9BYV1 514 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 CELF4Q9BZC1 486 aaKnown RBP7.67□□□□□ -1.18
VPS53-213ENST00000572334 ERVK-5Q9HDB9 667 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 TRPV2Q9Y5S1 764 aa7.67□□□□□ -1.18
VPS53-213ENST00000572334 KLF18A0A0U1RQI7 1052 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 GOLGA8AA7E2F4 631 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 GOLGA8BA8MQT2 603 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 hCG_1984214I3L0E3 225 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 MMP1P03956 469 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ITGB1P05556 798 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 KLRC1P26715 233 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 IRS1P35568 1242 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 RCAN1P53805 252 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ZP2Q05996 745 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 APOBRQ0VD83 1088 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 AP3B2Q13367 1082 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 BTG3Q14201 252 aaPredicted RBP7.66□□□□□ -1.18
VPS53-213ENST00000572334 PFKFB3Q16875 520 aaPredicted RBP7.66□□□□□ -1.18
VPS53-213ENST00000572334 TMEM266Q2M3C6 531 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 TMEM31Q5JXX7 168 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 JAKMIP3Q5VZ66 844 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ADGRD2Q7Z7M1 963 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 RSPH3Q86UC2 560 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 CMTR2Q8IYT2 770 aaKnown RBP7.66□□□□□ -1.18
VPS53-213ENST00000572334 LINC01465Q8N7H1 131 aa7.66□□□□□ -1.18
VPS53-213ENST00000572334 ZNF713Q8N859 430 aaPredicted RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms