RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 CHMP2AO43633 222 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 RPLP2P05387 115 aaKnown RBP22.76■■□□□ 1.23
NUP88-204ENST00000572290 ATP4AP20648 1035 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 RABEP1Q15276 862 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 PLEKHG4Q58EX7 1191 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 SEPT8Q92599 483 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 GJA10Q969M2 543 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 NAP1L4Q99733 375 aaKnown RBP22.76■■□□□ 1.23
NUP88-204ENST00000572290 UNC45AQ9H3U1 944 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 SLC28A3Q9HAS3 691 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 SH2B1Q9NRF2 756 aaPredicted RBP22.76■■□□□ 1.23
NUP88-204ENST00000572290 PCDHA2Q9Y5H9 948 aa22.76■■□□□ 1.23
NUP88-204ENST00000572290 LAMA2P24043 3122 aaKnown RBP22.75■■□□□ 1.23
NUP88-204ENST00000572290 PSMD10O75832 226 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 MMP1P03956 469 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 GCFC2P16383 781 aaKnown RBP22.75■■□□□ 1.23
NUP88-204ENST00000572290 SFNP31947 248 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 JAK3P52333 1124 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 FOSBP53539 338 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 NR5A1Q13285 461 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 EARS2Q5JPH6 523 aaKnown RBP22.75■■□□□ 1.23
NUP88-204ENST00000572290 ZNF484Q5JVG2 852 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 PPP4R3AQ6IN85 833 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 HERC6Q8IVU3 1022 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 ETNPPLQ8TBG4 499 aa22.75■■□□□ 1.23
NUP88-204ENST00000572290 BBXQ8WY36 941 aaPredicted RBP22.75■■□□□ 1.23
NUP88-204ENST00000572290 LLPHQ9BRT6 129 aaKnown RBP22.75■■□□□ 1.23
NUP88-204ENST00000572290 FAM49AQ9H0Q0 323 aaPredicted RBP22.75■■□□□ 1.23
NUP88-204ENST00000572290 KIF28PB7ZC32 967 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 RBAK-RBAKDNI3L0D1 243 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 SLC37A4O43826 429 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 CHRNA1P02708 482 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 MYOGP15173 224 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 MGAT3Q09327 533 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 GRIN2CQ14957 1233 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 KRT40Q6A162 431 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 MTHFD1LQ6UB35 978 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 RDM1Q8NG50 284 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 TNFRSF25Q93038 417 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 OSBPL7Q9BZF2 842 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 IGSF9BQ9UPX0 1349 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 COL1A2P08123 1366 aa22.74■■□□□ 1.23
NUP88-204ENST00000572290 SMIM35A0A1B0GVV1 85 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 CCNT1O60563 726 aaKnown RBP22.73■■□□□ 1.23
NUP88-204ENST00000572290 KLRC1P26715 233 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 DEFB103AP81534 67 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 MRPS6P82932 125 aaKnown RBP22.73■■□□□ 1.23
NUP88-204ENST00000572290 TRMT1LQ7Z2T5 733 aaKnown RBP22.73■■□□□ 1.23
NUP88-204ENST00000572290 MIER3Q7Z3K6 550 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 DIS3L2Q8IYB7 885 aaKnown RBP22.73■■□□□ 1.23
NUP88-204ENST00000572290 MYLIPQ8WY64 445 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 FAM167AQ96KS9 214 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 CDY2AQ9Y6F7 541 aa22.73■■□□□ 1.23
NUP88-204ENST00000572290 SCN5AQ14524 2016 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 FAM205CA6NFA0 338 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 BTBD18B2RXH4 712 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 ST18O60284 1047 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 GHRP10912 638 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 IER5Q5VY09 327 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 B3GNT9Q6UX72 402 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 APBB2Q92870 758 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 FAM20AQ96MK3 541 aa22.72■■□□□ 1.23
NUP88-204ENST00000572290 M0QZ92 97 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 HMGN5P82970 282 aaKnown RBP22.71■■□□□ 1.23
NUP88-204ENST00000572290 PPP2R2DQ66LE6 453 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.71■■□□□ 1.23
NUP88-204ENST00000572290 NME8Q8N427 588 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 IL27Q8NEV9 243 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 ZBED2Q9BTP6 218 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 IFIH1Q9BYX4 1025 aaKnown RBP22.71■■□□□ 1.23
NUP88-204ENST00000572290 KCNMB3Q9NPA1 279 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 NRBP2Q9NSY0 501 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 CEP131Q9UPN4 1083 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 TRPV2Q9Y5S1 764 aa22.71■■□□□ 1.23
NUP88-204ENST00000572290 ZBTB42B2RXF5 422 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 TLL1O43897 1013 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 ZNF862O60290 1169 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 MARCH6O60337 910 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 AMHP03971 560 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 OATP04181 439 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 CA3P07451 260 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 MKRN4PQ13434 485 aaPredicted RBP22.7■■□□□ 1.22
NUP88-204ENST00000572290 LPIN1Q14693 890 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 SAFBQ15424 915 aaKnown RBP eCLIP22.7■■□□□ 1.22
NUP88-204ENST00000572290 FBXO47Q5MNV8 452 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 TMCO2Q7Z6W1 182 aaPredicted RBP22.7■■□□□ 1.22
NUP88-204ENST00000572290 C8orf76Q96K31 380 aa22.7■■□□□ 1.22
NUP88-204ENST00000572290 TBX3O15119 743 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 C22orf31O95567 290 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 FOSL2P15408 326 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 GUCY1B3Q02153 619 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 PRKCEQ02156 737 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 TMEM62Q0P6H9 643 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 UGCGQ16739 394 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 FAM184AQ8NB25 1140 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 PRDM12Q9H4Q4 367 aa22.69■■□□□ 1.22
NUP88-204ENST00000572290 GJB5O95377 273 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 TSHZ1Q6ZSZ6 1077 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 POTEDQ86YR6 584 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 KIAA0319LQ8IZA0 1049 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms