RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 MAP3K20Q9NYL2 800 aaKnown RBP15.15■□□□□ 0.02
CCDC40-208ENST00000572270 SQORQ9Y6N5 450 aa15.15■□□□□ 0.02
CCDC40-208ENST00000572270 HIDE1A8MVS5 230 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 LAG3P18627 525 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 SARSP49591 514 aaKnown RBP15.14■□□□□ 0.01
CCDC40-208ENST00000572270 TDGQ13569 410 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 ACSF2Q96CM8 615 aaPredicted RBP15.14■□□□□ 0.01
CCDC40-208ENST00000572270 ZFP91Q96JP5 570 aaPredicted RBP15.14■□□□□ 0.01
CCDC40-208ENST00000572270 BCAS3Q9H6U6 928 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 PADI3Q9ULW8 664 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 DUSP12Q9UNI6 340 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 HCFC2Q9Y5Z7 792 aa15.14■□□□□ 0.01
CCDC40-208ENST00000572270 FOXP2O15409 715 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 EOMESO95936 686 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 WEE2P0C1S8 567 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 SP4Q02446 784 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 GRIK4Q16099 956 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 ATAT1Q5SQI0 421 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 RARS2Q5T160 578 aaKnown RBP15.13■□□□□ 0.01
CCDC40-208ENST00000572270 KIAA1841Q6NSI8 718 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 TMC7Q7Z402 723 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 AMNQ9BXJ7 453 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 VAT1LQ9HCJ6 419 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 CDV3Q9UKY7 258 aaKnown RBP15.13■□□□□ 0.01
CCDC40-208ENST00000572270 TRPV2Q9Y5S1 764 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 LOXHD1Q8IVV2 1947 aa15.13■□□□□ 0.01
CCDC40-208ENST00000572270 MAP1BP46821 2468 aaKnown RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 ARP10275 920 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 HOXA13P31271 388 aaPredicted RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 ATXN1P54253 815 aaKnown RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 PLCB3Q01970 1234 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 GHRHRQ02643 423 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 COL9A2Q14055 689 aaPredicted RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 ASPRV1Q53RT3 343 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 XRRA1Q6P2D8 792 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 SAMD3Q8N6K7 520 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 GPR161Q8N6U8 529 aaKnown RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 FAM49AQ9H0Q0 323 aaPredicted RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 TYW1Q9NV66 732 aaKnown RBP15.12■□□□□ 0.01
CCDC40-208ENST00000572270 NCDNQ9UBB6 729 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 PCDHA1Q9Y5I3 950 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 FANCMQ8IYD8 2048 aa15.12■□□□□ 0.01
CCDC40-208ENST00000572270 OTOGLQ3ZCN5 2332 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 MBLAC1A4D2B0 266 aaPredicted RBP15.11■□□□□ 0.01
CCDC40-208ENST00000572270 OPLAHO14841 1288 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 KINO60870 393 aaKnown RBP15.11■□□□□ 0.01
CCDC40-208ENST00000572270 STAM2O75886 525 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 MS4A1P11836 297 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 CA8P35219 290 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 KRT17Q04695 432 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 SMC1AQ14683 1233 aaKnown RBP15.11■□□□□ 0.01
CCDC40-208ENST00000572270 MIER1Q8N108 512 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 PNMA1Q8ND90 353 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 DZANK1Q9NVP4 752 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 HCSTQ9UBK5 93 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 DDX19BQ9UMR2 479 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 CHD6Q8TD26 2715 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 IGSF9BQ9UPX0 1349 aa15.11■□□□□ 0.01
CCDC40-208ENST00000572270 DENND4AQ7Z401 1863 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 DENND3A2RUS2 1198 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 TRIM6-TRIM34B2RNG4 842 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 FIBPO43427 364 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 SP9P0CG40 484 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 MARK3P27448 753 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 PPM1AP35813 382 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 IGBP1P78318 339 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 TBC1D8BQ0IIM8 1120 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 BMS1Q14692 1282 aaKnown RBP15.1■□□□□ 0.01
CCDC40-208ENST00000572270 FAM102BQ5T8I3 360 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 VPS53Q5VIR6 699 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 FCHSD1Q86WN1 690 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 TMEM87AQ8NBN3 555 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 KAT14Q9H8E8 782 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 JMJD4Q9H9V9 463 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 ZBTB40Q9NUA8 1239 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 ERAP1Q9NZ08 941 aa15.1■□□□□ 0.01
CCDC40-208ENST00000572270 PRR5-ARHGAP8B1AHC4 643 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 GCOM1H8Y6P7 765 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 ADRB1P08588 477 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 PARP1P09874 1014 aaKnown RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 POLR2MP0CAP2 368 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 PCP11498 1178 aaKnown RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 TCF7P36402 384 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 ARHGAP8P85298 464 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 TMEM62Q0P6H9 643 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 NFX1Q12986 1120 aaKnown RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 ALX1Q15699 326 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 SPECC1Q5M775 1068 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 MFSD6Q6ZSS7 791 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 CCDC149Q6ZUS6 474 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 OTOP3Q7RTS5 596 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 DGKHQ86XP1 1220 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 C12orf76Q8N812 135 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 SECISBP2LQ93073 1101 aaKnown RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 INPP4AQ96PE3 977 aaPredicted RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 ZKSCAN3Q9BRR0 538 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 RTKNQ9BST9 563 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 CHMP4BQ9H444 224 aaKnown RBP15.09■□□□□ 0.01
CCDC40-208ENST00000572270 CWH43Q9H720 699 aa15.09■□□□□ 0.01
CCDC40-208ENST00000572270 C1orf112Q9NSG2 853 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms