RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ZNF143P52747 638 aaPredicted RBP7.34□□□□□ -1.23
VPS53-212ENST00000572259 TNK2Q07912 1038 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 MORC3Q14149 939 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 NFIXQ14938 502 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 MTERF2Q49AM1 385 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 CCDC184Q52MB2 194 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 TM4SF20Q53R12 229 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 INO80DQ53TQ3 878 aaPredicted RBP7.34□□□□□ -1.23
VPS53-212ENST00000572259 CT47A1Q5JQC4 288 aaPredicted RBP7.34□□□□□ -1.23
VPS53-212ENST00000572259 CDKAL1Q5VV42 579 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 CHPFQ8IZ52 775 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 TTC8Q8TAM2 541 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 E2F7Q96AV8 911 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 FAM126AQ9BYI3 521 aaPredicted RBP7.34□□□□□ -1.23
VPS53-212ENST00000572259 PRDM14Q9GZV8 571 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 LRP2BPQ9P2M1 347 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 ZNF69Q9UC07 566 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 INTUQ9ULD6 942 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 ZNF451Q9Y4E5 1061 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 CACNA1FO60840 1977 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 PRAMEF22A3QJZ6 481 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 PRR19A6NJB7 356 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 AGRPO00253 132 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 POLRMTO00411 1230 aaKnown RBP7.33□□□□□ -1.24
VPS53-212ENST00000572259 TIMM44O43615 452 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 CEACAM5P06731 702 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 MYL6BP14649 208 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 FOSL1P15407 271 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 GRIK1P39086 918 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 TRAPPC10P48553 1259 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 ST5P78524 1137 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 ACBD5Q5T8D3 534 aaPredicted RBP7.33□□□□□ -1.24
VPS53-212ENST00000572259 MRM1Q6IN84 353 aaKnown RBP7.33□□□□□ -1.24
VPS53-212ENST00000572259 KSR2Q6VAB6 950 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 C14orf80Q86SX3 495 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 WDR63Q8IWG1 891 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 TEX19Q8NA77 164 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 ST13P5Q8NFI4 369 aaPredicted RBP7.33□□□□□ -1.24
VPS53-212ENST00000572259 NLGN2Q8NFZ4 835 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 NETO1Q8TDF5 533 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 FGD4Q96M96 766 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 DSCC1Q9BVC3 393 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 EPN3Q9H201 632 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 TRIT1Q9H3H1 467 aaKnown RBP7.33□□□□□ -1.24
VPS53-212ENST00000572259 GP6Q9HCN6 339 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 GPATCH2Q9NW75 528 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 GFOD1Q9NXC2 390 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 WHRNQ9P202 907 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 PTCH2Q9Y6C5 1203 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 LAMB4A4D0S4 1761 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 CARMIL3Q8ND23 1372 aa7.33□□□□□ -1.24
VPS53-212ENST00000572259 IL16Q14005 1332 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 H0YIN7 160 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 CBFA2T2O43439 604 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 CAMTA2O94983 1202 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 ZNF853P0CG23 659 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 PDE6BP35913 854 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 PIP4K2AP48426 406 aaPredicted RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 NFKB2Q00653 900 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 NMIQ13287 307 aaPredicted RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 SNW1Q13573 536 aaKnown RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 IFI16Q16666 785 aaKnown RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 HSP90AB3PQ58FF7 597 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 ICE2Q659A1 982 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 TBC1D9BQ66K14 1250 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 NBPF5PQ86XG9 351 aaPredicted RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 SDR16C5Q8N3Y7 309 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 MYRIPQ8NFW9 859 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 ENOX1Q8TC92 643 aaKnown RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 NYXQ9GZU5 481 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 KLHL25Q9H0H3 589 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 DDX21Q9NR30 783 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS53-212ENST00000572259 HYPKQ9NX55 129 aa7.32□□□□□ -1.24
VPS53-212ENST00000572259 DBF4Q9UBU7 674 aaPredicted RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 NIP7Q9Y221 180 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS53-212ENST00000572259 MRPS23Q9Y3D9 190 aaKnown RBP7.32□□□□□ -1.24
VPS53-212ENST00000572259 NUP98P52948 1817 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 AFDNP55196 1824 aaKnown RBP7.31□□□□□ -1.24
VPS53-212ENST00000572259 KIF13BQ9NQT8 1826 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 MAP3K15Q6ZN16 1313 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 GOLGB1Q14789 3259 aaKnown RBP7.31□□□□□ -1.24
VPS53-212ENST00000572259 TMEM265A0A087WTH1 108 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 A0A0G2JLW4 131 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 E2F8A0AVK6 867 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 IQCA1LA6NCM1 817 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 H3BS24 57 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 RBAK-RBAKDNI3L0D1 243 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 NOP56O00567 594 aaKnown RBP7.31□□□□□ -1.24
VPS53-212ENST00000572259 TGFB1P01137 390 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 YY1P25490 414 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 NEK2P51955 445 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 DDR1Q08345 913 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 NKPD1Q17RQ9 610 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 CCDC30Q5VVM6 783 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 WWC2Q6AWC2 1192 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 RINLQ6ZS11 566 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 PPP1R42Q7Z4L9 355 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 TMC3Q7Z5M5 1100 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 DRC7Q8IY82 874 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 PLD6Q8N2A8 252 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms