RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NLRC5Q86WI3 1866 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 DDX39AO00148 427 aaKnown RBP15.81■□□□□ 0.12
CLN3-235ENST00000568497 HTRA4P83105 476 aaPredicted RBP15.81■□□□□ 0.12
CLN3-235ENST00000568497 DLX2Q07687 328 aaPredicted RBP15.81■□□□□ 0.12
CLN3-235ENST00000568497 SMAD4Q13485 552 aaKnown RBP15.81■□□□□ 0.12
CLN3-235ENST00000568497 HSDL1Q3SXM5 330 aa15.81■□□□□ 0.12
CLN3-235ENST00000568497 PCNX4Q63HM2 1172 aa15.81■□□□□ 0.12
CLN3-235ENST00000568497 CPLX2Q6PUV4 134 aaKnown RBP15.81■□□□□ 0.12
CLN3-235ENST00000568497 CYFIP1Q7L576 1253 aa15.81■□□□□ 0.12
CLN3-235ENST00000568497 ERMP1Q7Z2K6 904 aa15.81■□□□□ 0.12
CLN3-235ENST00000568497 TMEM192Q8IY95 271 aa15.81■□□□□ 0.12
CLN3-235ENST00000568497 C6orf50Q9HD87 102 aa15.81■□□□□ 0.12
CLN3-235ENST00000568497 CACNA1HO95180 2353 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 B4DLN1 442 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 SPATA31C2B4DYI2 1134 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 FAM86B1E9PN63 330 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 LGR5O75473 907 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 UPP2O95045 317 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 GH1P01241 217 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 MMP3P08254 477 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 FAM86B2P0C5J1 330 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 VCPP55072 806 aaKnown RBP15.8■□□□□ 0.12
CLN3-235ENST00000568497 MKRN4PQ13434 485 aaPredicted RBP15.8■□□□□ 0.12
CLN3-235ENST00000568497 TRIM50Q86XT4 487 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 DHX37Q8IY37 1157 aaKnown RBP15.8■□□□□ 0.12
CLN3-235ENST00000568497 REXO1Q8N1G1 1221 aaKnown RBP15.8■□□□□ 0.12
CLN3-235ENST00000568497 C7orf31Q8N865 590 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 INPP4AQ96PE3 977 aaPredicted RBP15.8■□□□□ 0.12
CLN3-235ENST00000568497 IGFLR1Q9H665 355 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 FOXD4L1Q9NU39 408 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 MAP3K20Q9NYL2 800 aaKnown RBP15.8■□□□□ 0.12
CLN3-235ENST00000568497 UBIAD1Q9Y5Z9 338 aa15.8■□□□□ 0.12
CLN3-235ENST00000568497 H0Y858 1186 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 EIF5BO60841 1220 aaKnown RBP15.79■□□□□ 0.12
CLN3-235ENST00000568497 ZXDAP98168 799 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 ARHGAP4P98171 946 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 NR5A1Q13285 461 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 CELF3Q5SZQ8 465 aaKnown RBP15.79■□□□□ 0.12
CLN3-235ENST00000568497 ZNF618Q5T7W0 954 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 UTP14CQ5TAP6 766 aaKnown RBP15.79■□□□□ 0.12
CLN3-235ENST00000568497 MYSM1Q5VVJ2 828 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 TMX3Q96JJ7 454 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 SPATA33Q96N06 139 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 TLR9Q9NR96 1032 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 GTF2IRD1Q9UHL9 959 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 CD207Q9UJ71 328 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 PCDHA4Q9UN74 947 aa15.79■□□□□ 0.12
CLN3-235ENST00000568497 STK36Q9NRP7 1315 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 ESYT2A0FGR8 921 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 WNT7AO00755 349 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 TBX10O75333 385 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 TDP2O95551 362 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 KCNA2P16389 499 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 CTNNB1P35222 781 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 ZNF76P36508 570 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 SREBF1P36956 1147 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 HYAL1Q12794 435 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 HIC1Q14526 733 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 TRAF7Q6Q0C0 670 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 BLIDQ8IZY5 108 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 SAMD3Q8N6K7 520 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 DBF4BQ8NFT6 615 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 KAT2BQ92831 832 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 MXRA8Q9BRK3 442 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 MLXIPQ9HAP2 919 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 JADE2Q9NQC1 790 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 HDAC6Q9UBN7 1215 aa15.78■□□□□ 0.12
CLN3-235ENST00000568497 EMSYQ7Z589 1322 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 ATG2AQ2TAZ0 1938 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 hCG_1984214I3L0E3 225 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 M0R2N6 131 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 CDKL5O76039 1030 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 ID4P47928 161 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 NDUFV1P49821 464 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 ZNF200P98182 395 aaPredicted RBP15.77■□□□□ 0.12
CLN3-235ENST00000568497 PTK7Q13308 1070 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 ITGB3BPQ13352 177 aaPredicted RBP15.77■□□□□ 0.12
CLN3-235ENST00000568497 MTMR1Q13613 665 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 MBTPS1Q14703 1052 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 INF2Q27J81 1249 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 CTC1Q2NKJ3 1217 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 TRIM71Q2Q1W2 868 aaKnown RBP15.77■□□□□ 0.12
CLN3-235ENST00000568497 ASCL5Q7RTU5 278 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 PLA2G4DQ86XP0 818 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 ZNF713Q8N859 430 aaPredicted RBP15.77■□□□□ 0.12
CLN3-235ENST00000568497 CCDC148Q8NFR7 591 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 TBCKQ8TEA7 893 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 ZBTB10Q96DT7 871 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 PHF20Q9BVI0 1012 aa15.77■□□□□ 0.12
CLN3-235ENST00000568497 PLXNA3P51805 1871 aa15.77■□□□□ 0.11
CLN3-235ENST00000568497 RALGAPA2Q2PPJ7 1873 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 LINC01565O15544 149 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 FIBPO43427 364 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 GNA11P29992 359 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 AVPR2P30518 371 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 ICAM3P32942 547 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 GTF2F1P35269 517 aaKnown RBP eCLIP15.76■□□□□ 0.11
CLN3-235ENST00000568497 SIGLEC14Q08ET2 396 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 AP3B2Q13367 1082 aa15.76■□□□□ 0.11
CLN3-235ENST00000568497 PRR16Q569H4 304 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms