RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 CDH22Q9UJ99 828 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 NT5C2P49902 561 aa18.67■□□□□ 0.58
CLK3-223ENST00000568488 MARCH8Q5T0T0 291 aa18.67■□□□□ 0.58
CLK3-223ENST00000568488 PDE12Q6L8Q7 609 aaKnown RBP18.67■□□□□ 0.58
CLK3-223ENST00000568488 SENP7Q9BQF6 1050 aa18.67■□□□□ 0.58
CLK3-223ENST00000568488 MAD2L2Q9UI95 211 aa18.67■□□□□ 0.58
CLK3-223ENST00000568488 TRPV2Q9Y5S1 764 aa18.67■□□□□ 0.58
CLK3-223ENST00000568488 SQORQ9Y6N5 450 aa18.67■□□□□ 0.58
CLK3-223ENST00000568488 MBLAC1A4D2B0 266 aaPredicted RBP18.66■□□□□ 0.58
CLK3-223ENST00000568488 C2CD4DB7Z1M9 353 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 HOXB8P17481 243 aaPredicted RBP18.66■□□□□ 0.58
CLK3-223ENST00000568488 MFAP1P55081 439 aaKnown RBP18.66■□□□□ 0.58
CLK3-223ENST00000568488 NFX1Q12986 1120 aaKnown RBP18.66■□□□□ 0.58
CLK3-223ENST00000568488 ANKRD45Q5TZF3 282 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 NLRX1Q86UT6 975 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 GIMAP8Q8ND71 665 aaPredicted RBP18.66■□□□□ 0.58
CLK3-223ENST00000568488 FLCNQ8NFG4 579 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 SEPT1Q8WYJ6 367 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 ENTPD7Q9NQZ7 604 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 HCSTQ9UBK5 93 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 SALL3Q9BXA9 1300 aa18.66■□□□□ 0.58
CLK3-223ENST00000568488 GSTTP1A0A1W2PQM5 241 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 FSCN2O14926 492 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 RPLP2P05387 115 aaKnown RBP18.65■□□□□ 0.58
CLK3-223ENST00000568488 SARSP49591 514 aaKnown RBP18.65■□□□□ 0.58
CLK3-223ENST00000568488 KCNC3Q14003 757 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 TMEM266Q2M3C6 531 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 FAM102BQ5T8I3 360 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 CES5AQ6NT32 575 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 COLGALT1Q8NBJ5 622 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 KCNG4Q8TDN1 519 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 RILPL2Q969X0 211 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 TCF25Q9BQ70 676 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 TMX1Q9H3N1 280 aa18.65■□□□□ 0.58
CLK3-223ENST00000568488 TYW1Q9NV66 732 aaKnown RBP18.65■□□□□ 0.58
CLK3-223ENST00000568488 PUF60Q9UHX1 559 aaKnown RBP18.65■□□□□ 0.58
CLK3-223ENST00000568488 MED19A0JLT2 244 aaPredicted RBP18.64■□□□□ 0.57
CLK3-223ENST00000568488 PALM3A6NDB9 673 aaPredicted RBP18.64■□□□□ 0.57
CLK3-223ENST00000568488 RRN3P2A6NIE6 340 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 ASGR2P07307 311 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 INSRRP14616 1297 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 CLCN5P51795 746 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 PDE1AP54750 535 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 PIBF1Q8WXW3 757 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 CELF4Q9BZC1 486 aaKnown RBP18.64■□□□□ 0.57
CLK3-223ENST00000568488 SMARCAD1Q9H4L7 1026 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 POMKQ9H5K3 350 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 PKD2L1Q9P0L9 805 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 PCDHB15Q9Y5E8 787 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 MYO10Q9HD67 2058 aa18.64■□□□□ 0.57
CLK3-223ENST00000568488 PNMA6FA0A0J9YX94 578 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 HIDE1A8MVS5 230 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 ATP9AO75110 1047 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 TPRNQ4KMQ1 711 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 PCNX4Q63HM2 1172 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 SMARCC2Q8TAQ2 1214 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 RASGRP4Q8TDF6 673 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 MRPS27Q92552 414 aaKnown RBP18.63■□□□□ 0.57
CLK3-223ENST00000568488 KRT23Q9C075 422 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 LIMD1Q9UGP4 676 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 GINS2Q9Y248 185 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 FRMPD4Q14CM0 1322 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 IGSF9BQ9UPX0 1349 aa18.63■□□□□ 0.57
CLK3-223ENST00000568488 DENND3A2RUS2 1198 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 SLC35G1Q2M3R5 365 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 DGLUCYQ7Z3D6 616 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 TMC7Q7Z402 723 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 CASP10Q92851 521 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 RMDN1Q96DB5 314 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 NECTIN4Q96NY8 510 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 RIOX1Q9H6W3 641 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 NGRNQ9NPE2 291 aaKnown RBP18.62■□□□□ 0.57
CLK3-223ENST00000568488 WDR87Q6ZQQ6 2873 aa18.62■□□□□ 0.57
CLK3-223ENST00000568488 MGEA5O60502 916 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 WEE2P0C1S8 567 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 KCNA2P16389 499 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 KRT76Q01546 638 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 IMMTQ16891 758 aaKnown RBP18.61■□□□□ 0.57
CLK3-223ENST00000568488 XRRA1Q6P2D8 792 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 USP17L6PQ6QN14 398 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 TICAM2Q86XR7 235 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 TRAPPC12Q8WVT3 735 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 CUL5Q93034 780 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 ADAM2Q99965 735 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 ADAM7Q9H2U9 754 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 RNF216Q9NWF9 866 aaPredicted RBP18.61■□□□□ 0.57
CLK3-223ENST00000568488 LZTS1Q9Y250 596 aa18.61■□□□□ 0.57
CLK3-223ENST00000568488 PI15O43692 258 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 CYTH3O43739 400 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 LAG3P18627 525 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 CA8P35219 290 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 ITIH3Q06033 890 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 ANGPT1Q15389 498 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 TDRD5Q8NAT2 981 aaKnown RBP18.6■□□□□ 0.57
CLK3-223ENST00000568488 CDHR1Q96JP9 859 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 CWH43Q9H720 699 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 CNNM2Q9H8M5 875 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 ATP6V0A4Q9HBG4 840 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 PCDHA2Q9Y5H9 948 aa18.6■□□□□ 0.57
CLK3-223ENST00000568488 GVINP1Q7Z2Y8 2422 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms