RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ZNF765Q7L2R6 523 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 COPS6Q7L5N1 327 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 CLASRPQ8N2M8 674 aaKnown RBP7.05□□□□□ -1.28
VPS39-209ENST00000568029 RILPL2Q969X0 211 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 MRFAP1L1Q96HT8 127 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 HEXIM2Q96MH2 286 aaKnown RBP7.05□□□□□ -1.28
VPS39-209ENST00000568029 SNTG2Q9NY99 539 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 SCN9AQ15858 1988 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 TTC41PQ6P2S7 1318 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 UBN2Q6ZU65 1347 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 SALL3Q9BXA9 1300 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 CACNA1FO60840 1977 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 ANKRD34BA5PLL1 514 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 FAM170BA6NMN3 283 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 C9IYK1 514 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 DYRK3O43781 588 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 IFIT2P09913 472 aaKnown RBP7.04□□□□□ -1.28
VPS39-209ENST00000568029 NBPF9Q3BBW0 867 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 KIAA1211LQ6NV74 962 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 KRT26Q7Z3Y9 468 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 SRPK1Q96SB4 655 aaKnown RBP7.04□□□□□ -1.28
VPS39-209ENST00000568029 MYD88Q99836 296 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 HAUS7Q99871 368 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 TEX13AQ9BXU3 409 aaPredicted RBP7.04□□□□□ -1.28
VPS39-209ENST00000568029 IL1RAPL2Q9NP60 686 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 ST7Q9NRC1 585 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 CNOT7Q9UIV1 285 aaKnown RBP7.04□□□□□ -1.28
VPS39-209ENST00000568029 KCNH3Q9ULD8 1083 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 USP16Q9Y5T5 823 aa7.04□□□□□ -1.28
VPS39-209ENST00000568029 FAM86C2PA6NEL3 165 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 B2RBV5 119 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 FRAT2O75474 233 aaPredicted RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 GLRX3O76003 335 aaKnown RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 IGKV5-2P06315 115 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 PTMSP20962 102 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 CHMLP26374 656 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 ANAPC15P60006 121 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 AUHQ13825 339 aaKnown RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 GCKRQ14397 625 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 BMS1Q14692 1282 aaKnown RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 AXDND1Q5T1B0 1012 aaPredicted RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 MRM1Q6IN84 353 aaKnown RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 CCDC144CPQ8IYA2 1237 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 C7orf61Q8IZ16 206 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 MFSD4AQ8N468 514 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 FBXL6Q8N531 539 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 PLBD2Q8NHP8 589 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 SHKBP1Q8TBC3 707 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 RUFY2Q8WXA3 655 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 CDCA5Q96FF9 252 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 SUCLG2Q96I99 432 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 OSBPL1AQ9BXW6 950 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 MKRN2Q9H000 416 aaKnown RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 KLHL25Q9H0H3 589 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 PIF1Q9H611 641 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 PCDHB10Q9UN67 800 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 DDX60Q8IY21 1712 aaKnown RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 RTL9Q8NET4 1388 aa7.03□□□□□ -1.28
VPS39-209ENST00000568029 ZNF646O15015 1829 aaPredicted RBP7.03□□□□□ -1.28
VPS39-209ENST00000568029 ZNF609O15014 1411 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 HIP1O00291 1037 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 CBFA2T2O43439 604 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 SUSD5O60279 629 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 ALDH1B1P30837 517 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 MCM2P49736 904 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 OXCT1P55809 520 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 PKN2Q16513 984 aaKnown RBP7.02□□□□□ -1.29
VPS39-209ENST00000568029 PRAMEF18Q5VWM3 479 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 ZDHHC13Q8IUH4 622 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 SHISA5Q8N114 240 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 C2orf69Q8N8R5 385 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 DTWD2Q8NBA8 298 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 ENOX1Q8TC92 643 aaKnown RBP7.02□□□□□ -1.29
VPS39-209ENST00000568029 Q96M66 194 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 GBP3Q9H0R5 595 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 BICC1Q9H694 974 aaKnown RBP7.02□□□□□ -1.29
VPS39-209ENST00000568029 CWC22Q9HCG8 908 aaKnown RBP7.02□□□□□ -1.29
VPS39-209ENST00000568029 ECHDC1Q9NTX5 307 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 GGA3Q9NZ52 723 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 WHRNQ9P202 907 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 SUSD2Q9UGT4 822 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 PCDHB12Q9Y5F1 795 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 CAPN6Q9Y6Q1 641 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 LAMB1P07942 1786 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 CEP290O15078 2479 aa7.02□□□□□ -1.29
VPS39-209ENST00000568029 FAM221BA6H8Z2 402 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 WDR64B1ANS9 1081 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 PSMD14O00487 310 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 SHOXO15266 292 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 CD247P20963 164 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 GPTP24298 496 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 HOXA10P31260 410 aaPredicted RBP7.01□□□□□ -1.29
VPS39-209ENST00000568029 IFRD2Q12894 506 aaPredicted RBP7.01□□□□□ -1.29
VPS39-209ENST00000568029 TCEAL1Q15170 157 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 HEATR6Q6AI08 1181 aaKnown RBP7.01□□□□□ -1.29
VPS39-209ENST00000568029 OTOP1Q7RTM1 612 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 PI4K2BQ8TCG2 481 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 RPGRQ92834 1020 aaKnown RBP7.01□□□□□ -1.29
VPS39-209ENST00000568029 SGSM3Q96HU1 749 aa7.01□□□□□ -1.29
VPS39-209ENST00000568029 GBP4Q96PP9 640 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms