RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KRT40Q6A162 431 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 SWSAP1Q6NVH7 229 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 CNKSR3Q6P9H4 555 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 CKAP2LQ8IYA6 745 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 RDM1Q8NG50 284 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 ATP8B4Q8TF62 1192 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 C8orf76Q96K31 380 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 TBC1D32Q96NH3 1257 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 DISC1Q9NRI5 854 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 KIF3AQ9Y496 699 aa15.13■□□□□ 0.01
CLK3-216ENST00000564468 COL1A2P08123 1366 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 MBLAC1A4D2B0 266 aaPredicted RBP15.12■□□□□ 0.01
CLK3-216ENST00000564468 TBX3O15119 743 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 MARCH6O60337 910 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 CCNT1O60563 726 aaKnown RBP15.12■□□□□ 0.01
CLK3-216ENST00000564468 DTNBO60941 627 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 IGBP1P78318 339 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 ST3GAL1Q11201 340 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 RAB30Q15771 203 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 ZNF484Q5JVG2 852 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 CCDC60Q8IWA6 550 aaPredicted RBP15.12■□□□□ 0.01
CLK3-216ENST00000564468 DIS3L2Q8IYB7 885 aaKnown RBP15.12■□□□□ 0.01
CLK3-216ENST00000564468 PHOSPHO2Q8TCD6 241 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 OXER1Q8TDS5 423 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 BBXQ8WY36 941 aaPredicted RBP15.12■□□□□ 0.01
CLK3-216ENST00000564468 WNT8BQ93098 351 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 FAM167AQ96KS9 214 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 FAM20AQ96MK3 541 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 UIMC1Q96RL1 719 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 SLC9A7Q96T83 725 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 MSRAQ9UJ68 235 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 CEP131Q9UPN4 1083 aa15.12■□□□□ 0.01
CLK3-216ENST00000564468 MAFBQ9Y5Q3 323 aaPredicted RBP15.12■□□□□ 0.01
CLK3-216ENST00000564468 ABHD14A-ACY1A0A1B0GW23 586 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 TNFRSF10AO00220 468 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 NBNO60934 754 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 PSMD10O75832 226 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 BAG4O95429 457 aaKnown RBP15.11■□□□□ 0.01
CLK3-216ENST00000564468 KCNJ6P48051 423 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 NR5A1Q13285 461 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 IKBKEQ14164 716 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 FAM26DQ5JW98 314 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 TRAF7Q6Q0C0 670 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 MIER3Q7Z3K6 550 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 ETNPPLQ8TBG4 499 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 VWCEQ96DN2 955 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 NRBP2Q9NSY0 501 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 CXXC1Q9P0U4 656 aaPredicted RBP15.11■□□□□ 0.01
CLK3-216ENST00000564468 GABBR1Q9UBS5 961 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 PCDHA2Q9Y5H9 948 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 GTF3C3Q9Y5Q9 886 aa15.11■□□□□ 0.01
CLK3-216ENST00000564468 BTBD18B2RXH4 712 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 M0QZ92 97 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 ATP2A2P16615 1042 aaKnown RBP15.1■□□□□ 0.01
CLK3-216ENST00000564468 DNAJB2P25686 324 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 MARCH8Q5T0T0 291 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 IER5Q5VY09 327 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 SLFN12Q8IYM2 578 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 NME8Q8N427 588 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 SEPT8Q92599 483 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 TNFRSF25Q93038 417 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 BACH2Q9BYV9 841 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 UNC45AQ9H3U1 944 aa15.1■□□□□ 0.01
CLK3-216ENST00000564468 SIP14410 1827 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 SMIM35A0A1B0GVV1 85 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 KIF28PB7ZC32 967 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 CHMP2AO43633 222 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 SLC37A4O43826 429 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 DKC1O60832 514 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLK3-216ENST00000564468 CTSHP09668 335 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 FOSBP53539 338 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 GNL2Q13823 731 aaKnown RBP15.09■□□□□ 0.01
CLK3-216ENST00000564468 GPNMBQ14956 572 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 MTHFD1LQ6UB35 978 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 FBXO18Q8NFZ0 1043 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 DNAJB3Q8WWF6 145 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 APBB2Q92870 758 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 TIFAQ96CG3 184 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 GAS2L1Q99501 681 aaPredicted RBP15.09■□□□□ 0.01
CLK3-216ENST00000564468 FOXP1Q9H334 677 aaPredicted RBP15.09■□□□□ 0.01
CLK3-216ENST00000564468 KCNMB3Q9NPA1 279 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 IGSF9BQ9UPX0 1349 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 PTPRSQ13332 1948 aa15.09■□□□□ 0.01
CLK3-216ENST00000564468 MAGEB2O15479 319 aa15.08■□□□□ 0
CLK3-216ENST00000564468 ATP4AP20648 1035 aa15.08■□□□□ 0
CLK3-216ENST00000564468 COL9A1P20849 921 aa15.08■□□□□ 0
CLK3-216ENST00000564468 KLRC1P26715 233 aa15.08■□□□□ 0
CLK3-216ENST00000564468 MBTPS1Q14703 1052 aa15.08■□□□□ 0
CLK3-216ENST00000564468 GRIN2CQ14957 1233 aa15.08■□□□□ 0
CLK3-216ENST00000564468 PLEKHG4Q58EX7 1191 aa15.08■□□□□ 0
CLK3-216ENST00000564468 B3GNT9Q6UX72 402 aa15.08■□□□□ 0
CLK3-216ENST00000564468 RUFY4Q6ZNE9 571 aa15.08■□□□□ 0
CLK3-216ENST00000564468 TMX3Q96JJ7 454 aa15.08■□□□□ 0
CLK3-216ENST00000564468 PBX4Q9BYU1 374 aa15.08■□□□□ 0
CLK3-216ENST00000564468 ZNF576Q9H609 170 aa15.08■□□□□ 0
CLK3-216ENST00000564468 PCDHA11Q9Y5I1 949 aa15.08■□□□□ 0
CLK3-216ENST00000564468 SQORQ9Y6N5 450 aa15.08■□□□□ 0
CLK3-216ENST00000564468 GRXCR1A8MXD5 290 aa15.07■□□□□ 0
CLK3-216ENST00000564468 OATP04181 439 aa15.07■□□□□ 0
CLK3-216ENST00000564468 MRPS6P82932 125 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms