RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TMEM132AQ24JP5 1023 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 LRRC4CQ9HCJ2 640 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 FBXL5Q9UKA1 691 aa14.44□□□□□ -0.1
CLN3-210ENST00000563874 DCDC2CA8MYV0 355 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 MRPL12P52815 198 aaKnown RBP14.43□□□□□ -0.1
CLN3-210ENST00000563874 MARSP56192 900 aaKnown RBP14.43□□□□□ -0.1
CLN3-210ENST00000563874 PEX26Q7Z412 305 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 LRRC57Q8N9N7 239 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 SCFD2Q8WU76 684 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 DPH5Q9H2P9 285 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 IKZF4Q9H2S9 585 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 SPATA31A5Q5VU36 1347 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 SPATA31A7Q8IWB4 1347 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 PGRMC1O00264 195 aaKnown RBP14.43□□□□□ -0.1
CLN3-210ENST00000563874 CLSTN1O94985 981 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 PON1P27169 355 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 ADAT2Q7Z6V5 191 aaKnown RBP14.43□□□□□ -0.1
CLN3-210ENST00000563874 PRPF38AQ8NAV1 312 aaKnown RBP14.43□□□□□ -0.1
CLN3-210ENST00000563874 PLCB1Q9NQ66 1216 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 KDM3AQ9Y4C1 1321 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 H0YGN5 161 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 CLIC2O15247 247 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 TTI1O43156 1089 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 AKAP3O75969 853 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 PLCG2P16885 1265 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 NOVP48745 357 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 CASP4P49662 377 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 FOXR2Q6PJQ5 311 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 DAAM2Q86T65 1068 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 SFR1Q86XK3 245 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 TPCN2Q8NHX9 752 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 NFS1Q9Y697 457 aa14.43□□□□□ -0.1
CLN3-210ENST00000563874 FAM107AO95990 144 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 AFPP02771 609 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 SNHG28P0DPA3 235 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 KCNA1Q09470 495 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 SF3B2Q13435 895 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 DPY19L2P1Q6NXN4 242 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 CYFIP2Q96F07 1278 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 DHX36Q9H2U1 1008 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 DDX4Q9NQI0 724 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 RSPH10B2B2RC85 870 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 TTLL1O95922 423 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 RSPH10BP0C881 870 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 XRCC5P13010 732 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 HOXD13P35453 343 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 COPB2P35606 906 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 SLC12A3P55017 1021 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 CYP4A11Q02928 519 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 MICALCLQ6ZW33 695 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 CATSPER3Q86XQ3 398 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 GPATCH11Q8N954 259 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 U2AF1L4Q8WU68 220 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.42□□□□□ -0.13e-6■□□□□ 10.1
CLN3-210ENST00000563874 NOVA2Q9UNW9 492 aaKnown RBP14.42□□□□□ -0.1
CLN3-210ENST00000563874 DAGLAQ9Y4D2 1042 aa14.42□□□□□ -0.1
CLN3-210ENST00000563874 ZBTB5O15062 677 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 SNAP25P60880 206 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 SF3A3Q12874 501 aaKnown RBP eCLIP14.41□□□□□ -0.1
CLN3-210ENST00000563874 CUL1Q13616 776 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 QPCTQ16769 361 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 PRR16Q569H4 304 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 EMC10Q5UCC4 262 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 CNBD1Q8NA66 436 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 ACTRT1Q8TDG2 376 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 PBKQ96KB5 322 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 REEP2Q9BRK0 252 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 CNOT8Q9UFF9 292 aaKnown RBP14.41□□□□□ -0.1
CLN3-210ENST00000563874 NR2E1Q9Y466 385 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 PCDHB13Q9Y5F0 798 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 COL5A3P25940 1745 aaPredicted RBP14.41□□□□□ -0.1
CLN3-210ENST00000563874 SFI1A8K8P3 1242 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 GFPT2O94808 682 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 FSBPO95073 299 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 GTF2IP78347 998 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 PRPF4BQ13523 1007 aaKnown RBP14.41□□□□□ -0.1
CLN3-210ENST00000563874 EDRF1Q3B7T1 1238 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 HYIQ5T013 277 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 LRRC45Q96CN5 670 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 CABS1Q96KC9 395 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 OSGEPQ9NPF4 335 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 MYH4Q9Y623 1939 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 WNK3Q9BYP7 1800 aa14.41□□□□□ -0.1
CLN3-210ENST00000563874 ATP2C2O75185 946 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 FLOT1O75955 427 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 TAL1P17542 331 aaPredicted RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 GIT2Q14161 759 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 KNOP1Q1ED39 458 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 SHROOM1Q2M3G4 852 aaPredicted RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 SPRED3Q2MJR0 410 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 RPGRQ92834 1020 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 TRIM51Q9BSJ1 452 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 GCNT4Q9P109 453 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 MYH7BA7E2Y1 1941 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 GCFC2P16383 781 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 DHX9Q08211 1270 aaKnown RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 SLC12A6Q9UHW9 1150 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 GGA1Q9UJY5 639 aa14.4□□□□□ -0.1
CLN3-210ENST00000563874 CCNL1Q9UK58 526 aaPredicted RBP14.4□□□□□ -0.1
CLN3-210ENST00000563874 PCDHA1Q9Y5I3 950 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms