RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 PKN1Q16512 942 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 TAF2Q6P1X5 1199 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 TRAPPC12Q8WVT3 735 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 SENP7Q9BQF6 1050 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 RNF19AQ9NV58 838 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 PADI3Q9ULW8 664 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 IGSF9BQ9UPX0 1349 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 NCOR2Q9Y618 2525 aa11.99□□□□□ -0.49
SF3B3-204ENST00000563739 C2orf16Q68DN1 1984 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 GALR2O43603 387 aaPredicted RBP11.98□□□□□ -0.49
SF3B3-204ENST00000563739 BRD1O95696 1058 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 GNAT1P11488 350 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 CCDC178Q5BJE1 867 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 PCNX4Q63HM2 1172 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 USP17L6PQ6QN14 398 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 TMEM184AQ6ZMB5 413 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 TMEM40Q8WWA1 233 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 DSCC1Q9BVC3 393 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 CWH43Q9H720 699 aa11.98□□□□□ -0.49
SF3B3-204ENST00000563739 ZNF215Q9UL58 517 aaPredicted RBP11.98□□□□□ -0.49
SF3B3-204ENST00000563739 KDM3AQ9Y4C1 1321 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 STAM2O75886 525 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 SCG2P13521 617 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 ANTXR2P58335 489 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 TMEM62Q0P6H9 643 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 APOBRQ0VD83 1088 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 GNPTABQ3T906 1256 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 IFIT1BQ5T764 474 aaKnown RBP11.97□□□□□ -0.49
SF3B3-204ENST00000563739 ATOH1Q92858 354 aaPredicted RBP11.97□□□□□ -0.49
SF3B3-204ENST00000563739 RIPOR3Q96MK2 946 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 CDHR5Q9HBB8 845 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 ERVK-5Q9HDB9 667 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 TRPV2Q9Y5S1 764 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 EP300Q09472 2414 aaPredicted RBP11.97□□□□□ -0.49
SF3B3-204ENST00000563739 CEP250Q9BV73 2442 aa11.97□□□□□ -0.49
SF3B3-204ENST00000563739 FANCMQ8IYD8 2048 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 PNMA6FA0A0J9YX94 578 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 HIDE1A8MVS5 230 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 INSRRP14616 1297 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 SP100P23497 879 aaPredicted RBP11.96□□□□□ -0.49
SF3B3-204ENST00000563739 HDAC1Q13547 482 aaPredicted RBP11.96□□□□□ -0.49
SF3B3-204ENST00000563739 TMEM266Q2M3C6 531 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 FAM102BQ5T8I3 360 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 CWF19L1Q69YN2 538 aaKnown RBP11.96□□□□□ -0.49
SF3B3-204ENST00000563739 ANKRD54Q6NXT1 300 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 CWC27Q6UX04 472 aaKnown RBP11.96□□□□□ -0.49
SF3B3-204ENST00000563739 PLEKHM2Q8IWE5 1019 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 COLGALT1Q8NBJ5 622 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 APOL5Q9BWW9 433 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 LNPKQ9C0E8 428 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 FAM49AQ9H0Q0 323 aaPredicted RBP11.96□□□□□ -0.49
SF3B3-204ENST00000563739 UBIAD1Q9Y5Z9 338 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 SQORQ9Y6N5 450 aa11.96□□□□□ -0.49
SF3B3-204ENST00000563739 OTOGLQ3ZCN5 2332 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 CFAP47Q6ZTR5 3102 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 C2CD4DB7Z1M9 353 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 C9IYK1 514 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 PIK3CDO00329 1044 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 PPFIA3O75145 1194 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 FGF18O76093 207 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 SARSP49591 514 aaKnown RBP11.95□□□□□ -0.5
SF3B3-204ENST00000563739 PLCB4Q15147 1175 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 LRRC55Q6ZSA7 311 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 KREMEN2Q8NCW0 462 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 RASGRP4Q8TDF6 673 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 RILPL2Q969X0 211 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 GPRASP2Q96D09 838 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 OSBPL3Q9H4L5 887 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 POMKQ9H5K3 350 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 TLE6Q9H808 572 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 CHD6Q8TD26 2715 aa11.95□□□□□ -0.5
SF3B3-204ENST00000563739 ZBTB42B2RXF5 422 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 CYP21A2P08686 494 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 PBX3P40426 434 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 IGBP1P78318 339 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 UBE3AQ05086 875 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 DSC3Q14574 896 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 FRMD5Q7Z6J6 570 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 PIBF1Q8WXW3 757 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 SEPT1Q8WYJ6 367 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 UBAC1Q9BSL1 405 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 FTHL17Q9BXU8 183 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 CELF4Q9BZC1 486 aaKnown RBP11.94□□□□□ -0.5
SF3B3-204ENST00000563739 KRT23Q9C075 422 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 ERAP1Q9NZ08 941 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 PKD2L1Q9P0L9 805 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 NOC2LQ9Y3T9 749 aaKnown RBP11.94□□□□□ -0.5
SF3B3-204ENST00000563739 PCDHA2Q9Y5H9 948 aa11.94□□□□□ -0.5
SF3B3-204ENST00000563739 ATRXP46100 2492 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 FGFR1P11362 822 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 TECP42680 631 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 PAK2Q13177 524 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 ITGB3BPQ13352 177 aaPredicted RBP11.93□□□□□ -0.5
SF3B3-204ENST00000563739 UBE2SQ16763 222 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 PLPP4Q5VZY2 271 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 XRRA1Q6P2D8 792 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 SMC5Q8IY18 1101 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 PPP2R3CQ969Q6 453 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 NEK1Q96PY6 1258 aa11.93□□□□□ -0.5
SF3B3-204ENST00000563739 CDCA3Q99618 268 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms