RNA–Protein interactions for RNA: ENST00000560734.5

SHF-208, Transcript of Src homology 2 domain containing F, human

TSL 3 BASIC

Gene SHF, Length 1,731 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHF-208	ENST00000560734	UTRN	P46939	3433 aa		27.68	■■■□□ 2.02
SHF-208	ENST00000560734	SLC16A3	O15427	465 aa	Known RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	PPP1R12B	O60237	982 aa	Predicted RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	HOXD13	P35453	343 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	CASP5	P51878	434 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	TMEM132B	Q14DG7	1078 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	NLRX1	Q86UT6	975 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	SULF1	Q8IWU6	871 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	WNK4	Q96J92	1243 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	PCMTD1	Q96MG8	357 aa	Predicted RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	DESI2	Q9BSY9	194 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	ACAD9	Q9H845	621 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	DNAI1	Q9UI46	699 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	ARHGEF35	A5YM69	484 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	MAPT	P10636	758 aa	Known RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	QARS	P47897	775 aa	Known RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	WDR59	Q6PJI9	974 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	NUCKS1	Q9H1E3	243 aa	Known RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	METTL14	Q9HCE5	456 aa	Known RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	RNF181	Q9P0P0	153 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	WRAP73	Q9P2S5	460 aa	Predicted RBP	27.67	■■■□□ 2.02
SHF-208	ENST00000560734	MYO1A	Q9UBC5	1043 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	WDR90	Q96KV7	1748 aa		27.67	■■■□□ 2.02
SHF-208	ENST00000560734	COL11A1	P12107	1806 aa	Predicted RBP	27.66	■■■□□ 2.02
SHF-208	ENST00000560734	LOC285556	D6RIA3	1793 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	RSPH10B2	B2RC85	870 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	NDUFA10	O95299	355 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	RSPH10B	P0C881	870 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	CHST13	Q8NET6	341 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	CDHR1	Q96JP9	859 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	AGPAT5	Q9NUQ2	364 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	PLAGL2	Q9UPG8	496 aa		27.66	■■■□□ 2.02
SHF-208	ENST00000560734	SPDYE16	A6NNV3	312 aa	Predicted RBP	27.65	■■■□□ 2.02
SHF-208	ENST00000560734	MYB	P10242	640 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	NR2F2	P24468	414 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	VGLL4	Q14135	290 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	C4orf19	Q8IY42	314 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	MYCT1	Q8N699	235 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	ERO1A	Q96HE7	468 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	INPP4A	Q96PE3	977 aa	Predicted RBP	27.65	■■■□□ 2.02
SHF-208	ENST00000560734	TCEAL9	Q9UHQ7	104 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	27.65	■■■□□ 2.02
SHF-208	ENST00000560734	CSAD	Q9Y600	493 aa		27.65	■■■□□ 2.02
SHF-208	ENST00000560734	GCNT3	O95395	438 aa		27.64	■■■□□ 2.02
SHF-208	ENST00000560734	NR3C2	P08235	984 aa		27.64	■■■□□ 2.02
SHF-208	ENST00000560734	KRT83	P78385	493 aa		27.64	■■■□□ 2.02
SHF-208	ENST00000560734	ALCAM	Q13740	583 aa		27.64	■■■□□ 2.02
SHF-208	ENST00000560734	ZNF746	Q6NUN9	644 aa	Predicted RBP	27.64	■■■□□ 2.02
SHF-208	ENST00000560734	ZC3H15	Q8WU90	426 aa	Known RBP	27.64	■■■□□ 2.02
SHF-208	ENST00000560734	ZFP91	Q96JP5	570 aa	Predicted RBP	27.64	■■■□□ 2.02
SHF-208	ENST00000560734	WDR64	B1ANS9	1081 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	NKRF	O15226	690 aa	Known RBP eCLIP	27.64	■■■□□ 2.01
SHF-208	ENST00000560734	SLU7	O95391	586 aa	Known RBP	27.64	■■■□□ 2.01
SHF-208	ENST00000560734	MYCL	P12524	364 aa	Predicted RBP	27.64	■■■□□ 2.01
SHF-208	ENST00000560734	CYLC1	P35663	651 aa	Predicted RBP	27.64	■■■□□ 2.01
SHF-208	ENST00000560734	IREB2	P48200	963 aa	Known RBP	27.64	■■■□□ 2.01
SHF-208	ENST00000560734	GNG11	P61952	73 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	ZNF720	Q7Z2F6	126 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	BANK1	Q8NDB2	785 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	L3MBTL3	Q96JM7	780 aa	Predicted RBP	27.64	■■■□□ 2.01
SHF-208	ENST00000560734	CHP1	Q99653	195 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	FZD1	Q9UP38	647 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	PCDHB13	Q9Y5F0	798 aa		27.64	■■■□□ 2.01
SHF-208	ENST00000560734	KIF5C	O60282	957 aa		27.63	■■■□□ 2.01
SHF-208	ENST00000560734	PRPF6	O94906	941 aa	Known RBP	27.63	■■■□□ 2.01
SHF-208	ENST00000560734	NCBP1	Q09161	790 aa	Known RBP	27.63	■■■□□ 2.01
SHF-208	ENST00000560734	GOLGA5	Q8TBA6	731 aa		27.63	■■■□□ 2.01
SHF-208	ENST00000560734	TMEM174	Q8WUU8	243 aa		27.63	■■■□□ 2.01
SHF-208	ENST00000560734	SYN2	Q92777	582 aa	Predicted RBP	27.63	■■■□□ 2.01
SHF-208	ENST00000560734	FIZ1	Q96SL8	496 aa		27.63	■■■□□ 2.01
SHF-208	ENST00000560734	CYP39A1	Q9NYL5	469 aa		27.63	■■■□□ 2.01
SHF-208	ENST00000560734	CASQ1	P31415	396 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	KLK7	P49862	253 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	PSMC5	P62195	406 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	MYBPC2	Q14324	1141 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	GLIPR1L2	Q4G1C9	344 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	PADI6	Q6TGC4	694 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	USP50	Q70EL3	339 aa	Predicted RBP	27.62	■■■□□ 2.01
SHF-208	ENST00000560734	NEK11	Q8NG66	645 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	IWS1	Q96ST2	819 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	MKNK1	Q9BUB5	465 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	STRA6	Q9BX79	667 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	ANKEF1	Q9NU02	776 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	ARMCX3	Q9UH62	379 aa	Predicted RBP	27.62	■■■□□ 2.01
SHF-208	ENST00000560734	ASTN1	O14525	1302 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	NFASC	O94856	1347 aa		27.62	■■■□□ 2.01
SHF-208	ENST00000560734	EIF3CL	B5ME19	914 aa	Known RBP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	DKC1	O60832	514 aa	Known RBP eCLIP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	NR3C1	P04150	777 aa		27.61	■■■□□ 2.01
SHF-208	ENST00000560734	PPAT	Q06203	517 aa		27.61	■■■□□ 2.01
SHF-208	ENST00000560734	FAM178B	Q8IXR5	827 aa		27.61	■■■□□ 2.01
SHF-208	ENST00000560734	SMAP1	Q8IYB5	467 aa	Predicted RBP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	PROCA1	Q8NCQ7	364 aa	Predicted RBP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	TSC1	Q92574	1164 aa		27.61	■■■□□ 2.01
SHF-208	ENST00000560734	EIF3C	Q99613	913 aa	Known RBP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	FBXO40	Q9UH90	709 aa		27.61	■■■□□ 2.01
SHF-208	ENST00000560734	POLR2A	P24928	1970 aa	Known RBP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	DDX39A	O00148	427 aa	Known RBP	27.61	■■■□□ 2.01
SHF-208	ENST00000560734	ZBTB39	O15060	712 aa		27.61	■■■□□ 2.01
SHF-208	ENST00000560734	KCNMA1	Q12791	1236 aa		27.61	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms