RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 IL17RAQ96F46 866 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 UHRF1Q96T88 793 aaPredicted RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 ZNF577Q9BSK1 485 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 UPF3BQ9BZI7 483 aaKnown RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 LMCD1Q9NZU5 365 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 PCDHA2Q9Y5H9 948 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 CYP46A1Q9Y6A2 500 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 IGKV6D-21A0A0A0MT36 114 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 EVCP57679 992 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 NLRP5P59047 1200 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 STK3Q13188 491 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 AAK1Q2M2I8 961 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 FAM160B1Q5W0V3 765 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 MCTP2Q6DN12 878 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 MIS18BP1Q6P0N0 1132 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 TSHZ1Q6ZSZ6 1077 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 RTN4RL1Q86UN2 441 aaPredicted RBP11.61□□□□□ -0.55
LDLR-214ENST00000560628 CCDC60Q8IWA6 550 aaPredicted RBP11.61□□□□□ -0.55
LDLR-214ENST00000560628 TMEM192Q8IY95 271 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 CKAP2LQ8IYA6 745 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 RNF26Q9BY78 433 aaPredicted RBP11.61□□□□□ -0.55
LDLR-214ENST00000560628 CELF4Q9BZC1 486 aaKnown RBP11.61□□□□□ -0.55
LDLR-214ENST00000560628 ZNF302Q9NR11 478 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 COG5Q9UP83 839 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 GINS2Q9Y248 185 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 TRPV2Q9Y5S1 764 aa11.61□□□□□ -0.55
LDLR-214ENST00000560628 NID2Q14112 1375 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 SMIM35A0A1B0GVV1 85 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 M0QZ92 97 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 EDIL3O43854 480 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 HBP1O60381 514 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 ATP4AP20648 1035 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 IBSPP21815 317 aaPredicted RBP11.6□□□□□ -0.55
LDLR-214ENST00000560628 SLC26A2P50443 739 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 KRT76Q01546 638 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 SSRP1Q08945 709 aaKnown RBP11.6□□□□□ -0.55
LDLR-214ENST00000560628 GPM6BQ13491 265 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 TMEM266Q2M3C6 531 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 FIBCD1Q8N539 461 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 CCDC148Q8NFR7 591 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 BICD2Q8TD16 824 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 ATP8B4Q8TF62 1192 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 CDHR5Q9HBB8 845 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 TBC1D22BQ9NU19 505 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 PDRG1Q9NUG6 133 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 PADI3Q9ULW8 664 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 MICAL3Q7RTP6 2002 aa11.6□□□□□ -0.55
LDLR-214ENST00000560628 TCF20Q9UGU0 1960 aaKnown RBP11.59□□□□□ -0.55
LDLR-214ENST00000560628 VCANP13611 3396 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 H3BNC9 293 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 CPLX1O14810 134 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 DTNBO60941 627 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 CIITAP33076 1130 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 NFX1Q12986 1120 aaKnown RBP11.59□□□□□ -0.55
LDLR-214ENST00000560628 ZNF484Q5JVG2 852 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 ZNF746Q6NUN9 644 aaPredicted RBP11.59□□□□□ -0.55
LDLR-214ENST00000560628 TRIM22Q8IYM9 498 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 KIAA0319LQ8IZA0 1049 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 NME8Q8N427 588 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 LINC01599Q8WXQ3 324 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 GJA10Q969M2 543 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 MRPL38Q96DV4 380 aaKnown RBP11.59□□□□□ -0.55
LDLR-214ENST00000560628 ZNF274Q96GC6 653 aaPredicted RBP11.59□□□□□ -0.55
LDLR-214ENST00000560628 SAMD11Q96NU1 681 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 PPP1R16BQ96T49 567 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 GABBR1Q9UBS5 961 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 TCEAL9Q9UHQ7 104 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 SAMM50Q9Y512 469 aa11.59□□□□□ -0.55
LDLR-214ENST00000560628 TTC28Q96AY4 2481 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 ZBTB42B2RXF5 422 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 EPB41L2O43491 1005 aaKnown RBP11.58□□□□□ -0.56
LDLR-214ENST00000560628 RPLP2P05387 115 aaKnown RBP11.58□□□□□ -0.56
LDLR-214ENST00000560628 PSAPP07602 524 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 CTNNB1P35222 781 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 BMPR1AP36894 532 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 SETQ01105 290 aaPredicted RBP11.58□□□□□ -0.56
LDLR-214ENST00000560628 PAK2Q13177 524 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 BTG3Q14201 252 aaPredicted RBP11.58□□□□□ -0.56
LDLR-214ENST00000560628 PTPROQ16827 1216 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 METTL13Q8N6R0 699 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 LENG9Q96B70 501 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 AIFM3Q96NN9 605 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 TM6SF1Q9BZW5 370 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 TMX1Q9H3N1 280 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 SH3GLB2Q9NR46 395 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 PCDHA10Q9Y5I2 948 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 MAFBQ9Y5Q3 323 aaPredicted RBP11.58□□□□□ -0.56
LDLR-214ENST00000560628 SQORQ9Y6N5 450 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 IGSF9BQ9UPX0 1349 aa11.58□□□□□ -0.56
LDLR-214ENST00000560628 MSH4O15457 936 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 CHMP2AO43633 222 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 DGKIO75912 1065 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 CSPG5O95196 566 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 DEXIO95424 95 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 USP11P51784 963 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 PAN2Q504Q3 1202 aaKnown RBP11.57□□□□□ -0.56
LDLR-214ENST00000560628 EP400NLQ6ZTU2 488 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 SMAP1Q8IYB5 467 aaPredicted RBP11.57□□□□□ -0.56
LDLR-214ENST00000560628 BANK1Q8NDB2 785 aa11.57□□□□□ -0.56
LDLR-214ENST00000560628 TBCKQ8TEA7 893 aa11.57□□□□□ -0.56
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