RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 SNUPNO95149 360 aaKnown RBP12.38□□□□□ -0.43
CUX1-218ENST00000560541 POTEIP0CG38 1075 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 NT5C2P49902 561 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 HLTFQ14527 1009 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX1-218ENST00000560541 ASIC2Q16515 512 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 PREPLQ4J6C6 727 aaPredicted RBP12.38□□□□□ -0.43
CUX1-218ENST00000560541 POTEGQ6S5H5 508 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 POTEEQ6S8J3 1075 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 TRIM59Q8IWR1 403 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 RPUSD2Q8IZ73 545 aaKnown RBP12.38□□□□□ -0.43
CUX1-218ENST00000560541 RNPC3Q96LT9 517 aaKnown RBP12.38□□□□□ -0.43
CUX1-218ENST00000560541 GDF3Q9NR23 364 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 EMILIN3Q9NT22 766 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 SBF2Q86WG5 1849 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 RBAK-RBAKDNI3L0D1 243 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 RTN2O75298 545 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 SLC9A1P19634 815 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 KCNH2Q12809 1159 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 TRAF1Q13077 416 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 ORC2Q13416 577 aaPredicted RBP12.38□□□□□ -0.43
CUX1-218ENST00000560541 ASPRV1Q53RT3 343 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 MAATS1Q7Z4T9 603 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 C3orf20Q8ND61 904 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 CUL5Q93034 780 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 PSTPIP2Q9H939 334 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 PNMA6FA0A0J9YX94 578 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 C6orf229H3BNL8 230 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 RIMBP2O15034 1052 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 NR2F2P24468 414 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 SMARCA1P28370 1054 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 GTF2IP78347 998 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 PTK2Q05397 1052 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 PAK2Q13177 524 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 TBC1D25Q3MII6 688 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 MEI1Q5TIA1 1274 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 DDX42Q86XP3 938 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX1-218ENST00000560541 CCDC65Q8IXS2 484 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 INPP4AQ96PE3 977 aaPredicted RBP12.38□□□□□ -0.43
CUX1-218ENST00000560541 MXD3Q9BW11 206 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 AP1M1Q9BXS5 423 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 LRRC27Q9C0I9 530 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 BCAS3Q9H6U6 928 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 TSKSQ9UJT2 592 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 DAGLAQ9Y4D2 1042 aa12.38□□□□□ -0.43
CUX1-218ENST00000560541 PLCG2P16885 1265 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 HPDP32754 393 aaPredicted RBP12.37□□□□□ -0.43
CUX1-218ENST00000560541 ZNF543Q08ER8 600 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 DCAF17Q5H9S7 520 aaPredicted RBP12.37□□□□□ -0.43
CUX1-218ENST00000560541 BARGINQ6ZT62 677 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 LUC7LQ9NQ29 371 aaKnown RBP12.37□□□□□ -0.43
CUX1-218ENST00000560541 DDX4Q9NQI0 724 aaKnown RBP12.37□□□□□ -0.43
CUX1-218ENST00000560541 GGA1Q9UJY5 639 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 CYP11B2P19099 503 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 GBP2P32456 591 aaPredicted RBP12.37□□□□□ -0.43
CUX1-218ENST00000560541 SNAP25P60880 206 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 TCERG1LQ5VWI1 586 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 PPP4R3AQ6IN85 833 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 IQCKQ8N0W5 287 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 OR2W6PQ8NHA6 318 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 RUBCNQ92622 972 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 SPAG5Q96R06 1193 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 EDEM3Q9BZQ6 932 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 KCTD10Q9H3F6 313 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 PCDHGC5Q9Y5F6 944 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 PCDHA2Q9Y5H9 948 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 CDK5RAP2Q96SN8 1893 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 SRCAPQ6ZRS2 3230 aa12.37□□□□□ -0.43
CUX1-218ENST00000560541 CEP104O60308 925 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 MED24O75448 989 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 EPB41P11171 864 aaKnown RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 TAL1P17542 331 aaPredicted RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 PSMC6P62333 389 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 PABPC4Q13310 644 aaKnown RBP eCLIP12.36□□□□□ -0.432e-20■■■■■ 62.1
CUX1-218ENST00000560541 SHROOM1Q2M3G4 852 aaPredicted RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 GLE1Q53GS7 698 aaKnown RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 THEMIS2Q5TEJ8 643 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 ZNF571Q7Z3V5 609 aaPredicted RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 TAF4BQ92750 862 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 SCLT1Q96NL6 688 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 GOPCQ9HD26 462 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 POLLQ9UGP5 575 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 FAM196BA6NMK8 535 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 TTLL1O95922 423 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 TNFRSF8P28908 595 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 MRPL12P52815 198 aaKnown RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 SEC24CP53992 1094 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 CEP85LQ5SZL2 805 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 GANQ9H2C0 597 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 HDAC9Q9UKV0 1011 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 MYH7BA7E2Y1 1941 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 TMCO5BA8MYB1 307 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 hCG_1984214I3L0E3 225 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 COQ9O75208 318 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 FAM163BP0C2L3 166 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 CDC25CP30307 473 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 RANBP1P43487 201 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 CLK2P49760 499 aaKnown RBP12.36□□□□□ -0.43
CUX1-218ENST00000560541 SCNN1DP51172 638 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 RPS6KA1Q15418 735 aa12.36□□□□□ -0.43
CUX1-218ENST00000560541 ARSHQ5FYA8 562 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms