RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 RNF39Q9H2S5 420 aa15.97■□□□□ 0.15
TPM1-223ENST00000560445 TRPV2Q9Y5S1 764 aa15.97■□□□□ 0.15
TPM1-223ENST00000560445 TTC28Q96AY4 2481 aa15.97■□□□□ 0.15
TPM1-223ENST00000560445 TRANK1O15050 2925 aa15.97■□□□□ 0.15
TPM1-223ENST00000560445 CHD7Q9P2D1 2997 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 IGKV6D-21A0A0A0MT36 114 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 WDR64B1ANS9 1081 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 FAM86B1E9PN63 330 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 CHRNA1P02708 482 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 FAM86B2P0C5J1 330 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 GHRP10912 638 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 SFNP31947 248 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 CIITAP33076 1130 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 ANAPC15P60006 121 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 PKN1Q16512 942 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 FBXO47Q5MNV8 452 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.96■□□□□ 0.15
TPM1-223ENST00000560445 RUFY4Q6ZNE9 571 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 CKAP2LQ8IYA6 745 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 DNAJB3Q8WWF6 145 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 CRYGNQ8WXF5 182 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 IL17RAQ96F46 866 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 FAM49AQ9H0Q0 323 aaPredicted RBP15.96■□□□□ 0.15
TPM1-223ENST00000560445 PDRG1Q9NUG6 133 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 SAMM50Q9Y512 469 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 PCDHA10Q9Y5I2 948 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 CDY2AQ9Y6F7 541 aa15.96■□□□□ 0.15
TPM1-223ENST00000560445 KDM3AQ9Y4C1 1321 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 PRRC2BQ5JSZ5 2229 aaKnown RBP15.95■□□□□ 0.14
TPM1-223ENST00000560445 PRUNE2Q8WUY3 3088 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 EYSQ5T1H1 3165 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 IGLV3-22A0A075B6J6 115 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 LCHNA4D1U4 455 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 DDX39AO00148 427 aaKnown RBP15.95■□□□□ 0.14
TPM1-223ENST00000560445 STAG3L1P0CL83 205 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 MGAT3Q09327 533 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 PAK2Q13177 524 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 LPIN1Q14693 890 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 NTRK3Q16288 839 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 TIGD5Q53EQ6 642 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 PRR16Q569H4 304 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 MARCH8Q5T0T0 291 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 ABHD15Q6UXT9 468 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 BBXQ8WY36 941 aaPredicted RBP15.95■□□□□ 0.14
TPM1-223ENST00000560445 HLA-CQ95604 372 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 PCYT2Q99447 389 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 RIT2Q99578 217 aa15.95■□□□□ 0.14
TPM1-223ENST00000560445 COL4A4P53420 1690 aaPredicted RBP15.95■□□□□ 0.14
TPM1-223ENST00000560445 JAK3P52333 1124 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 CCT2P78371 535 aaKnown RBP15.94■□□□□ 0.14
TPM1-223ENST00000560445 TCTN1Q2MV58 587 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 MTHFD1LQ6UB35 978 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 TMCO2Q7Z6W1 182 aaPredicted RBP15.94■□□□□ 0.14
TPM1-223ENST00000560445 FIBCD1Q8N539 461 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 RDM1Q8NG50 284 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 WASF1Q92558 559 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 NAP1L4Q99733 375 aaKnown RBP15.94■□□□□ 0.14
TPM1-223ENST00000560445 CELF4Q9BZC1 486 aaKnown RBP15.94■□□□□ 0.14
TPM1-223ENST00000560445 VPS54Q9P1Q0 977 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 MTUS1Q9ULD2 1270 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 PCDHA4Q9UN74 947 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 TELO2Q9Y4R8 837 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 MYH9P35579 1960 aaKnown RBP15.94■□□□□ 0.14
TPM1-223ENST00000560445 IGSF9BQ9UPX0 1349 aa15.94■□□□□ 0.14
TPM1-223ENST00000560445 RALGAPA2Q2PPJ7 1873 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 TNFRSF10AO00220 468 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 MAGEB2O15479 319 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 GAS7O60861 476 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 UPP2O95045 317 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 CCNE2O96020 404 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 RB1P06400 928 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 TMOD1P28289 359 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 TOB2Q14106 344 aaPredicted RBP15.93■□□□□ 0.14
TPM1-223ENST00000560445 SWSAP1Q6NVH7 229 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 DAGLBQ8NCG7 672 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 GDPD5Q8WTR4 605 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 MAP7D2Q96T17 732 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 C11orf84Q9BUA3 381 aaPredicted RBP15.93■□□□□ 0.14
TPM1-223ENST00000560445 TEKT3Q9BXF9 490 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 NCOA5Q9HCD5 579 aaKnown RBP15.93■□□□□ 0.14
TPM1-223ENST00000560445 NCOR1O75376 2440 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 ADGRA3Q8IWK6 1321 aa15.93■□□□□ 0.14
TPM1-223ENST00000560445 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.92■□□□□ 0.14
TPM1-223ENST00000560445 RFXAPO00287 272 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 KLRC1P26715 233 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 MOXD1Q6UVY6 613 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 KRT25Q7Z3Z0 450 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 NPAS4Q8IUM7 802 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 CCDC60Q8IWA6 550 aaPredicted RBP15.92■□□□□ 0.14
TPM1-223ENST00000560445 BLIDQ8IZY5 108 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 ADAMTS19Q8TE59 1207 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 MRPL38Q96DV4 380 aaKnown RBP15.92■□□□□ 0.14
TPM1-223ENST00000560445 UPF3BQ9BZI7 483 aaKnown RBP15.92■□□□□ 0.14
TPM1-223ENST00000560445 LMAN2LQ9H0V9 348 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 SLKQ9H2G2 1235 aaPredicted RBP15.92■□□□□ 0.14
TPM1-223ENST00000560445 SUGCTQ9HAC7 445 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 NRBP2Q9NSY0 501 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 MAFBQ9Y5Q3 323 aaPredicted RBP15.92■□□□□ 0.14
TPM1-223ENST00000560445 STK36Q9NRP7 1315 aa15.92■□□□□ 0.14
TPM1-223ENST00000560445 EPOPA6NHQ4 379 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms