RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	KRT4	P19013	534 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	GPR85	P60893	370 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	LARP4	Q71RC2	724 aa	Known RBP eCLIP	4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	SGMS1	Q86VZ5	419 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	SCUBE1	Q8IWY4	988 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	CD244	Q9BZW8	370 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	INPP5F	Q9Y2H2	1132 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	REXO2	Q9Y3B8	237 aa	Known RBP	4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	FAM47E-STBD1	D6RA91	191 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	FOXN1	O15353	648 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	SOD2	P04179	222 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	KCNQ1	P51787	676 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	IL13RA1	P78552	427 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	COL10A1	Q03692	680 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	GRM7	Q14831	915 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	EIF4H	Q15056	248 aa	Known RBP	4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	KCNT2	Q6UVM3	1135 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	GPR135	Q8IZ08	494 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	THEMIS	Q8N1K5	641 aa	Predicted RBP	4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	D2HGDH	Q8N465	521 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	SH3RF2	Q8TEC5	729 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	TGIF2	Q9GZN2	237 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	ARHGAP28	Q9P2N2	729 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	PRKAG3	Q9UGI9	489 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	MRVI1	Q9Y6F6	885 aa		4.8	□□□□□ -1.64
SPG11-222	ENST00000560435	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	PMS2P1	A4D2B8	440 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	CAPN14	A8MX76	684 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	FBL	P22087	321 aa	Known RBP	4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	ADCY8	P40145	1251 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	STIL	Q15468	1287 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	BTBD8	Q5XKL5	378 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	IFNL3	Q8IZI9	196 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	TTPAL	Q9BTX7	342 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	OR10A2	Q9H208	303 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	ACBD3	Q9H3P7	528 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	SLC2A4RG	Q9NR83	387 aa		4.79	□□□□□ -1.64
SPG11-222	ENST00000560435	TMEM191C	A6NGB0	347 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	GJB6	O95452	261 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	PDE6A	P16499	860 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	PTPN1	P18031	435 aa	Known RBP	4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	PTGS1	P23219	599 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	LMO1	P25800	156 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	HGFAC	Q04756	655 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	PCOLCE	Q15113	449 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	NTRK3	Q16288	839 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	LRCH2	Q5VUJ6	765 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	TRIM68	Q6AZZ1	485 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	STYK1	Q6J9G0	422 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	NLGN4X	Q8N0W4	816 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	WNK4	Q96J92	1243 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	IPPK	Q9H8X2	491 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	INCENP	Q9NQS7	918 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	GALNT8	Q9NY28	637 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	HECA	Q9UBI9	543 aa	Predicted RBP	4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	SRPK3	Q9UPE1	567 aa		4.78	□□□□□ -1.64
SPG11-222	ENST00000560435	TCRBV5S4A2T	A0A5A2	114 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	FAM90A27P	A6NNH2	459 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	SLC26A4	O43511	780 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	SSB	P05455	408 aa	Known RBP eCLIP	4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	FGFR1	P11362	822 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	MRE11	P49959	708 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	MEOX1	P50221	254 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	CRHR2	Q13324	411 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	RRP1B	Q14684	758 aa	Known RBP	4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	SPTY2D1	Q68D10	685 aa	Predicted RBP	4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	FILIP1	Q7Z7B0	1213 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	SHCBP1	Q8NEM2	672 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	SGSM3	Q96HU1	749 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	MPHOSPH9	Q99550	1183 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	AARSD1	Q9BTE6	412 aa	Known RBP	4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	RIC8B	Q9NVN3	520 aa		4.77	□□□□□ -1.65
SPG11-222	ENST00000560435	BMP5	P22003	454 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	AOAH	P28039	575 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	GJA4	P35212	333 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	ADRA1B	P35368	520 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	TMEM200B	Q69YZ2	307 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	OTOP2	Q7RTS6	562 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	RPUSD2	Q8IZ73	545 aa	Known RBP	4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	OR14K1	Q8NGZ2	314 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	ALG1	Q9BT22	464 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	BTBD2	Q9BX70	525 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	CCSER2	Q9H7U1	834 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435	CDC42EP3	Q9UKI2	254 aa		4.76	□□□□□ -1.65
SPG11-222	ENST00000560435		A0A0G2JNJ9	132 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	PRODH	O43272	600 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	IL12RB1	P42701	662 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	SLC25A3	Q00325	362 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	GPR19	Q15760	415 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	CCDC142	Q17RM4	750 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	FIGN	Q5HY92	759 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	KANK2	Q63ZY3	851 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	LAIR1	Q6GTX8	287 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	RTKN2	Q8IZC4	609 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	ANKRD35	Q8N283	1001 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	OSBP2	Q969R2	916 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	TMEM176A	Q96HP8	235 aa		4.75	□□□□□ -1.65
SPG11-222	ENST00000560435	AGO3	Q9H9G7	860 aa	Known RBP	4.75	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms