RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CEP290O15078 2479 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 A0A1W2PPC1 479 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 EML1O00423 815 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 TREHO43280 583 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 ZNF862O60290 1169 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 PFKMP08237 780 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 ITGB8P26012 769 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
NEDD8-208ENST00000560427 ATP2C1P98194 919 aaPredicted RBP14.6□□□□□ -0.07
NEDD8-208ENST00000560427 RESTQ13127 1097 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 PTGDRQ13258 359 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 HIC1Q14526 733 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 NBR1Q14596 966 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 XKR3Q5GH77 459 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 ARL6IP4Q66PJ3 421 aaKnown RBP14.6□□□□□ -0.07
NEDD8-208ENST00000560427 NCAPH2Q6IBW4 605 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 C4orf32Q8N8J7 132 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 PPP1R13LQ8WUF5 828 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 DHX38Q92620 1227 aaKnown RBP14.6□□□□□ -0.07
NEDD8-208ENST00000560427 BADQ92934 168 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 PRO3102Q9H379 93 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 PCDHA2Q9Y5H9 948 aa14.6□□□□□ -0.07
NEDD8-208ENST00000560427 TANC1Q9C0D5 1861 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 LYPLA2O95372 231 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 SELPP16109 830 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 ATP4AP20648 1035 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 ZNF200P98182 395 aaPredicted RBP14.59□□□□□ -0.07
NEDD8-208ENST00000560427 UGCGQ16739 394 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 TRIM71Q2Q1W2 868 aaKnown RBP14.59□□□□□ -0.07
NEDD8-208ENST00000560427 MARCH8Q5T0T0 291 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 HAUS3Q68CZ6 603 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 LRRC8DQ7L1W4 858 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 RSPH3Q86UC2 560 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 FERMT3Q86UX7 667 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 C4orf19Q8IY42 314 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 ERMNQ8TAM6 284 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 LXNQ9BS40 222 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 NIFKQ9BYG3 293 aaKnown RBP14.59□□□□□ -0.07
NEDD8-208ENST00000560427 WNT8AQ9H1J5 351 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 ZSWIM4Q9H7M6 989 aa14.59□□□□□ -0.07
NEDD8-208ENST00000560427 SMIM35A0A1B0GVV1 85 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 ZBTB42B2RXF5 422 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 MAGEB2O15479 319 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 IQCF3P0C7M6 154 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 CKBP12277 381 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 MUTP22033 750 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 CYP2C18P33260 490 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 MDM2Q00987 491 aaPredicted RBP14.58□□□□□ -0.08
NEDD8-208ENST00000560427 PDIA5Q14554 519 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 PSRC1Q6PGN9 363 aaPredicted RBP14.58□□□□□ -0.08
NEDD8-208ENST00000560427 MTHFD1LQ6UB35 978 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 CHRDL2Q6WN34 429 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 DTHD1Q6ZMT9 781 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 EXOC8Q8IYI6 725 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 RPUSD2Q8IZ73 545 aaKnown RBP14.58□□□□□ -0.08
NEDD8-208ENST00000560427 BANK1Q8NDB2 785 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 HSD17B14Q9BPX1 270 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 EIF2AK1Q9BQI3 630 aaKnown RBP14.58□□□□□ -0.08
NEDD8-208ENST00000560427 TUFT1Q9NNX1 390 aa14.58□□□□□ -0.08
NEDD8-208ENST00000560427 MORC2Q9Y6X9 1032 aaPredicted RBP14.58□□□□□ -0.08
NEDD8-208ENST00000560427 POTEMA6NI47 508 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 C22orf31O95567 290 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 CSF2RAP15509 400 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 THPOP40225 353 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 TECP42680 631 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 IGBP1P78318 339 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 TARBP2Q15633 366 aaKnown RBP14.57□□□□□ -0.08
NEDD8-208ENST00000560427 OTUD6AQ7L8S5 288 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 ZNF710Q8N1W2 664 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 NME8Q8N427 588 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 IGSF22Q8N9C0 903 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 JPH2Q9BR39 696 aaPredicted RBP14.57□□□□□ -0.08
NEDD8-208ENST00000560427 POLR3CQ9BUI4 534 aaPredicted RBP14.57□□□□□ -0.08
NEDD8-208ENST00000560427 UBE2OQ9C0C9 1292 aaKnown RBP14.57□□□□□ -0.08
NEDD8-208ENST00000560427 IL23AQ9NPF7 189 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 SEPT9Q9UHD8 586 aaPredicted RBP14.57□□□□□ -0.08
NEDD8-208ENST00000560427 UMODL1Q5DID0 1318 aa14.57□□□□□ -0.08
NEDD8-208ENST00000560427 SLITRK3O94933 977 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 STBD1O95210 358 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 ZSCAN22P10073 491 aaPredicted RBP14.56□□□□□ -0.08
NEDD8-208ENST00000560427 RPA1P27694 616 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 YWHABP31946 246 aaKnown RBP14.56□□□□□ -0.08
NEDD8-208ENST00000560427 CCL23P55773 120 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 FAM26DQ5JW98 314 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 ANO5Q75V66 913 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 WNT8BQ93098 351 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 DYDC2Q96IM9 177 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 LRWD1Q9UFC0 647 aa14.56□□□□□ -0.08
NEDD8-208ENST00000560427 MYH9P35579 1960 aaKnown RBP14.56□□□□□ -0.08
NEDD8-208ENST00000560427 RSPH10B2B2RC85 870 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 RSPH10BP0C881 870 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 XRCC6P12956 609 aaKnown RBP eCLIP14.55□□□□□ -0.08
NEDD8-208ENST00000560427 KLRC1P26715 233 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 TMOD1P28289 359 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 CYP4A11Q02928 519 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 TBC1D8BQ0IIM8 1120 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 SF3A1Q15459 793 aaKnown RBP14.55□□□□□ -0.08
NEDD8-208ENST00000560427 ZNF618Q5T7W0 954 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 IER5Q5VY09 327 aa14.55□□□□□ -0.08
NEDD8-208ENST00000560427 TRAF7Q6Q0C0 670 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms