RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TRIM47Q96LD4 638 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 APBA2Q99767 749 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 ARHGAP39Q9C0H5 1083 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 EXOC1Q9NV70 894 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 FLRT1Q9NZU1 646 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 DACH1Q9UI36 760 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 DBR1Q9UK59 544 aaKnown RBP12.49□□□□□ -0.41
USP3-218ENST00000560202 PLXNA1Q9UIW2 1896 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 IGKV6D-21A0A0A0MT36 114 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 NPHP3-ACAD11A0A0J9YXS1 232 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 ARHGEF35A5YM69 484 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 BACH1O14867 736 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 ADCYAP1R1P41586 468 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 CCDC173Q0VFZ6 552 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 GIT2Q14161 759 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 IQCB1Q15051 598 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 CCL14Q16627 93 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 RINT1Q6NUQ1 792 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 COPS5Q92905 334 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 GPR20Q99678 358 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 RUSC1Q9BVN2 902 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 ZHX1Q9UKY1 873 aaPredicted RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 KIAA1217Q5T5P2 1943 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 NOP56O00567 594 aaKnown RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 ZNF862O60290 1169 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 TCF7P36402 384 aaPredicted RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 RARRES1P49788 294 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 CACNB1Q02641 598 aaPredicted RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 IRF5Q13568 498 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 KIF22Q14807 665 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 UVSSAQ2YD98 709 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 HSDL1Q3SXM5 330 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 CT47A1Q5JQC4 288 aaPredicted RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 C1orf186Q6ZWK4 172 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 DHX40Q8IX18 779 aaKnown RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 CCDC65Q8IXS2 484 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 SMYD4Q8IYR2 804 aaPredicted RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 ANP32BQ92688 251 aaKnown RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 SPATA33Q96N06 139 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 GTPBP4Q9BZE4 634 aaKnown RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 ZNF302Q9NR11 478 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 ANKEF1Q9NU02 776 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 PANK4Q9NVE7 773 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 KCND2Q9NZV8 630 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 GDAQ9Y2T3 454 aa12.48□□□□□ -0.41
USP3-218ENST00000560202 MAFBQ9Y5Q3 323 aaPredicted RBP12.48□□□□□ -0.41
USP3-218ENST00000560202 IGSF9BQ9UPX0 1349 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 BECN2A8MW95 431 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 PPP1R3GB7ZBB8 358 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 STBD1O95210 358 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 GH1P01241 217 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 IGHA2P01877 340 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 XRCC5P13010 732 aaKnown RBP12.47□□□□□ -0.41
USP3-218ENST00000560202 CD44P16070 742 aaKnown RBP12.47□□□□□ -0.41
USP3-218ENST00000560202 CYP2C19P33261 490 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 ARHGAP1Q07960 439 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 EHHADHQ08426 723 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 RAD51AP2Q09MP3 1159 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 STK4Q13043 487 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 PSMD2Q13200 908 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 LAMC2Q13753 1193 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 UTP14CQ5TAP6 766 aaKnown RBP12.47□□□□□ -0.41
USP3-218ENST00000560202 IQSEC1Q6DN90 963 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 PADI6Q6TGC4 694 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.47□□□□□ -0.41
USP3-218ENST00000560202 ANO5Q75V66 913 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 OTUD6AQ7L8S5 288 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 TRMT1LQ7Z2T5 733 aaKnown RBP12.47□□□□□ -0.41
USP3-218ENST00000560202 AOPEPQ8N6M6 819 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 PCYT2Q99447 389 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 REEP2Q9BRK0 252 aa12.47□□□□□ -0.41
USP3-218ENST00000560202 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.46□□□□□ -0.41
USP3-218ENST00000560202 FRMD3A2A2Y4 597 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 TMEM150BA6NC51 233 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 GOLGA6L19H0YKK7 550 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 SMPD1P17405 629 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 PTGS1P23219 599 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 ERCC5P28715 1186 aaPredicted RBP12.46□□□□□ -0.41
USP3-218ENST00000560202 FLT3LGP49771 235 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 STAT5BP51692 787 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 PRKCEQ02156 737 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 COASYQ13057 564 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 CCDC144BQ3MJ40 725 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 DUSP28Q4G0W2 176 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 XKR9Q5GH70 373 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 XKR3Q5GH77 459 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 PRAMEF19Q5SWL8 479 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 GJC2Q5T442 439 aaPredicted RBP12.46□□□□□ -0.41
USP3-218ENST00000560202 FAM160B1Q5W0V3 765 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 AFAP1L1Q8TED9 768 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 HPS3Q969F9 1004 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 EMID1Q96A84 441 aaPredicted RBP12.46□□□□□ -0.41
USP3-218ENST00000560202 CCDC43Q96MW1 224 aaKnown RBP12.46□□□□□ -0.41
USP3-218ENST00000560202 PPP1R9BQ96SB3 815 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 AZI2Q9H6S1 392 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 GABRQQ9UN88 632 aa12.46□□□□□ -0.41
USP3-218ENST00000560202 SMTNL1A8MU46 457 aa12.45□□□□□ -0.42
USP3-218ENST00000560202 IKBKBO14920 756 aa12.45□□□□□ -0.42
USP3-218ENST00000560202 NKRFO15226 690 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP3-218ENST00000560202 TBCAO75347 108 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms