RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 TOB1P50616 345 aaPredicted RBP9.63□□□□□ -0.87
USP3-217ENST00000560070 JAK3P52333 1124 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 TMEM62Q0P6H9 643 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 CTTNQ14247 550 aaKnown RBP9.63□□□□□ -0.87
USP3-217ENST00000560070 TRIM71Q2Q1W2 868 aaKnown RBP9.63□□□□□ -0.87
USP3-217ENST00000560070 TMEM240Q5SV17 173 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 TPH2Q8IWU9 490 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 CCDC155Q8N6L0 562 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 ATP8B4Q8TF62 1192 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 PPP1R16BQ96T49 567 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 OSBPL7Q9BZF2 842 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 TTC12Q9H892 705 aaPredicted RBP9.63□□□□□ -0.87
USP3-217ENST00000560070 IL23AQ9NPF7 189 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 PCDHB6Q9Y5E3 794 aa9.63□□□□□ -0.87
USP3-217ENST00000560070 MAFBQ9Y5Q3 323 aaPredicted RBP9.63□□□□□ -0.87
USP3-217ENST00000560070 EMSYQ7Z589 1322 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 RSPH10B2B2RC85 870 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 ZBTB39O15060 712 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 TBX3O15119 743 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 RSPH10BP0C881 870 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 SYT1P21579 422 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 SFNP31947 248 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 ADAM17P78536 824 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 CYP4A11Q02928 519 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 EPHA7Q15375 998 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 ZNF484Q5JVG2 852 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 MTHFD1LQ6UB35 978 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 LRRC8DQ7L1W4 858 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 SERINC5Q86VE9 423 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 SLFN12Q8IYM2 578 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 RPUSD2Q8IZ73 545 aaKnown RBP9.62□□□□□ -0.87
USP3-217ENST00000560070 TDHQ8IZJ6 230 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 METTL13Q8N6R0 699 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 AFAP1L1Q8TED9 768 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 TNPO1Q92973 898 aaKnown RBP9.62□□□□□ -0.87
USP3-217ENST00000560070 ZNF668Q96K58 619 aaPredicted RBP9.62□□□□□ -0.87
USP3-217ENST00000560070 RNPC3Q96LT9 517 aaKnown RBP9.62□□□□□ -0.87
USP3-217ENST00000560070 MTMR9Q96QG7 549 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 EIF2AK1Q9BQI3 630 aaKnown RBP9.62□□□□□ -0.87
USP3-217ENST00000560070 PRO3102Q9H379 93 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 SUGCTQ9HAC7 445 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 TUBE1Q9UJT0 475 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 VAV3Q9UKW4 847 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 GINS2Q9Y248 185 aa9.62□□□□□ -0.87
USP3-217ENST00000560070 LCTP09848 1927 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 OATP04181 439 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 P4HBP07237 508 aaKnown RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 SLC26A2P50443 739 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 NPEPPSP55786 919 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 PSMC5P62195 406 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 PRKCEQ02156 737 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 PTGDRQ13258 359 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 PPP2R5CQ13362 524 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 GPNMBQ14956 572 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 TCTN1Q2MV58 587 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 FOXD4L6Q3SYB3 417 aaPredicted RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 MTERF2Q49AM1 385 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 PLA2G4FQ68DD2 849 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 FAM173BQ6P4H8 233 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 B3GNT9Q6UX72 402 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 FOXD4L3Q6VB84 417 aaPredicted RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 C4orf32Q8N8J7 132 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 ZNF579Q8NAF0 562 aaKnown RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 CAGE1Q8TC20 777 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 BBXQ8WY36 941 aaPredicted RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 INTS4Q96HW7 963 aaKnown RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 CDHR5Q9HBB8 845 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 BMP2KQ9NSY1 1161 aaPredicted RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 WRAP73Q9P2S5 460 aaPredicted RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 SEPT9Q9UHD8 586 aaPredicted RBP9.61□□□□□ -0.87
USP3-217ENST00000560070 PLXNA1Q9UIW2 1896 aa9.61□□□□□ -0.87
USP3-217ENST00000560070 POTEMA6NI47 508 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 GRXCR1A8MXD5 290 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 ZBTB42B2RXF5 422 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 SOX1O00570 391 aaPredicted RBP9.6□□□□□ -0.87
USP3-217ENST00000560070 NBNO60934 754 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 SLITRK3O94933 977 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 STBD1O95210 358 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 CHRNA1P02708 482 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 OR52Z1P0C646 297 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 PDCP20941 246 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 IBSPP21815 317 aaPredicted RBP9.6□□□□□ -0.87
USP3-217ENST00000560070 HOXC8P31273 242 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 QARSP47897 775 aaKnown RBP9.6□□□□□ -0.87
USP3-217ENST00000560070 CLCN3P51790 818 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 CEBPZQ03701 1054 aaKnown RBP9.6□□□□□ -0.87
USP3-217ENST00000560070 XKR3Q5GH77 459 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 EFCAB12Q6NXP0 572 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 TRAF7Q6Q0C0 670 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 RSPH3Q86UC2 560 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 LRRC71Q8N4P6 559 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 RDM1Q8NG50 284 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 PIGOQ8TEQ8 1089 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 VWCEQ96DN2 955 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 LRCH3Q96II8 777 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 CXXC1Q9P0U4 656 aaPredicted RBP9.6□□□□□ -0.87
USP3-217ENST00000560070 PCDHA2Q9Y5H9 948 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 CDY2AQ9Y6F7 541 aa9.6□□□□□ -0.87
USP3-217ENST00000560070 MBLAC1A4D2B0 266 aaPredicted RBP9.59□□□□□ -0.87
USP3-217ENST00000560070 STX6O43752 255 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms