RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PTMSP20962 102 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 LIFRP42702 1097 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 RAB27AP51159 221 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 RBM5P52756 815 aaKnown RBP eCLIP5.9□□□□□ -1.46
LDLR-209ENST00000558528 RCAN1P53805 252 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 AK2P54819 239 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 CUL4AQ13619 759 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 DHX8Q14562 1220 aaKnown RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 CBX2Q14781 532 aaPredicted RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 AOC3Q16853 763 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 GFOD2Q3B7J2 385 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 DACT2Q5SW24 774 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 RASIP1Q5U651 963 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 ZBTB46Q86UZ6 589 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 SPATS2Q86XZ4 545 aaKnown RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 TEX11Q8IYF3 940 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 UBR7Q8N806 425 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 TTC8Q8TAM2 541 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 DDX1Q92499 740 aaKnown RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 DPF2Q92785 391 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 TMX3Q96JJ7 454 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 SCYL1Q96KG9 808 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 DHRS1Q96LJ7 313 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 TTC14Q96N46 770 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 LLPHQ9BRT6 129 aaKnown RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 AARSD1Q9BTE6 412 aaKnown RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 MAF1Q9H063 256 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 MKNK2Q9HBH9 465 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 DCP1AQ9NPI6 582 aaPredicted RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 USP40Q9NVE5 1235 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 MCM9Q9NXL9 1143 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 SAGE1Q9NXZ1 904 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 SWAP70Q9UH65 585 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 HACL1Q9UJ83 578 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 MUC3AQ02505 3323 aa5.9□□□□□ -1.47
LDLR-209ENST00000558528 TTLL8A6PVC2 850 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 J3QL48 77 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 GPR39O43194 453 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ORC4O43929 436 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 EFCAB14O75071 495 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ENTPD3O75355 529 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 KATNA1O75449 491 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 RFPL1O75677 317 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 TRPA1O75762 1119 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CDKL5O76039 1030 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CALM1P0DP23 149 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CALM2P0DP24 149 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CALM3P0DP25 149 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 RHOQP17081 205 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 PAX3P23760 479 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 EPHX2P34913 555 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 FLT3P36888 993 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ZNF157P51786 506 aaPredicted RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 EVCP57679 992 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 DYNLL1P63167 89 aaKnown RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 HMGN5P82970 282 aaKnown RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 FOXC1Q12948 553 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 DLGAP5Q15398 846 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ADCK5Q3MIX3 580 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 TRIM61Q5EBN2 209 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 TMEM201Q5SNT2 666 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 FAM102BQ5T8I3 360 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 C12orf60Q5U649 245 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 FKBP1CQ5VVH2 108 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 OVOS1Q6IE37 1185 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CNNM4Q6P4Q7 775 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CTR9Q6PD62 1173 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 Q6ZUG5 572 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 HDXQ7Z353 690 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 SAPCD2Q86UD0 394 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 FOXP4Q8IVH2 680 aaPredicted RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 CACTIN-AS1Q8N1I8 211 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 EXOC2Q96KP1 924 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 UBAC1Q9BSL1 405 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 IDI2Q9BXS1 227 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 AGXT2Q9BYV1 514 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 UPF3BQ9BZI7 483 aaKnown RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 RASSF4Q9H2L5 321 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ZNF277Q9NRM2 450 aaPredicted RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 TOMM22Q9NS69 142 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 CACNA2D2Q9NY47 1150 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 PKD2L1Q9P0L9 805 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 SFMBT1Q9UHJ3 866 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ZNF214Q9UL59 606 aaPredicted RBP5.89□□□□□ -1.47
LDLR-209ENST00000558528 SMC3Q9UQE7 1217 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ATP6V1DQ9Y5K8 247 aa5.89□□□□□ -1.47
LDLR-209ENST00000558528 ANKRD34BA5PLL1 514 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 CCDC69A6NI79 296 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 GOLGA6L22H0YM25 854 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 H7C1D1 291 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 IFIT3O14879 490 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 PRKAB2O43741 272 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 CHGBP05060 677 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 GSTP1P09211 210 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 FGFR1P11362 822 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 L1CAMP32004 1257 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 GNAQP50148 359 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 HAND2P61296 217 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 PURAQ00577 322 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 TNP2Q05952 138 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms