RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ATP2A2P16615 1042 aaKnown RBP9.77□□□□□ -0.85
USP3-208ENST00000558285 CYP3A7P24462 503 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 ITGB8P26012 769 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 CDC42EP1Q00587 391 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 ME3Q16798 604 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 C8orf34Q49A92 452 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 C9orf50Q5SZB4 431 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 PPP4R3AQ6IN85 833 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 OTOP2Q7RTS6 562 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 RPAINQ86UA6 219 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 ATP8B4Q8TF62 1192 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 TIFAQ96CG3 184 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 MS4A3Q96HJ5 214 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 JPH2Q9BR39 696 aaPredicted RBP9.77□□□□□ -0.85
USP3-208ENST00000558285 LARP6Q9BRS8 491 aaKnown RBP9.77□□□□□ -0.85
USP3-208ENST00000558285 ZBED2Q9BTP6 218 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 WNT8AQ9H1J5 351 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 RNPEPQ9H4A4 650 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 SLC28A3Q9HAS3 691 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 SETD4Q9NVD3 440 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 NOL7Q9UMY1 257 aaKnown RBP9.77□□□□□ -0.85
USP3-208ENST00000558285 LTBP2Q14767 1821 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 CENPFP49454 3210 aa9.77□□□□□ -0.85
USP3-208ENST00000558285 IGLV3-22A0A075B6J6 115 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 GSTTP1A0A1W2PQM5 241 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 ATG7O95352 703 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 MARK3P27448 753 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 ORC2Q13416 577 aaPredicted RBP9.76□□□□□ -0.85
USP3-208ENST00000558285 LETM2Q2VYF4 491 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 MIER3Q7Z3K6 550 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 RASGRP4Q8TDF6 673 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 LMBR1Q8WVP7 490 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 CRYGNQ8WXF5 182 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 SCLYQ96I15 445 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 C8orf76Q96K31 380 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 MAP7D2Q96T17 732 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 PPME1Q9Y570 386 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 PCDHA11Q9Y5I1 949 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 SQORQ9Y6N5 450 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 TNRC18O15417 2968 aaPredicted RBP9.76□□□□□ -0.85
USP3-208ENST00000558285 PPFIA3O75145 1194 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 HOXC8P31273 242 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 DNM2P50570 870 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 NUBP1P53384 320 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 PIK3AP1Q6ZUJ8 805 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 TRIM50Q86XT4 487 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 NECAB1Q8N987 351 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 NSUN7Q8NE18 718 aaKnown RBP9.76□□□□□ -0.85
USP3-208ENST00000558285 CYP2W1Q8TAV3 490 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 SLC5A5Q92911 643 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 CCDC43Q96MW1 224 aaKnown RBP9.76□□□□□ -0.85
USP3-208ENST00000558285 GAS2L1Q99501 681 aaPredicted RBP9.76□□□□□ -0.85
USP3-208ENST00000558285 FTHL17Q9BXU8 183 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 PDCL3Q9H2J4 239 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 DISC1Q9NRI5 854 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.76□□□□□ -0.85
USP3-208ENST00000558285 PCDHA2Q9Y5H9 948 aa9.76□□□□□ -0.85
USP3-208ENST00000558285 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.75□□□□□ -0.85
USP3-208ENST00000558285 TREHO43280 583 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 CCNT1O60563 726 aaKnown RBP9.75□□□□□ -0.85
USP3-208ENST00000558285 CXCL10P02778 98 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 MMP1P03956 469 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 INSRRP14616 1297 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 DNAJB2P25686 324 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 IGBP1P78318 339 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 ITGB3BPQ13352 177 aaPredicted RBP9.75□□□□□ -0.85
USP3-208ENST00000558285 INF2Q27J81 1249 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 ZNF618Q5T7W0 954 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 RASIP1Q5U651 963 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 SWSAP1Q6NVH7 229 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 ABHD15Q6UXT9 468 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 LRCH3Q96II8 777 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 KCNJ14Q9UNX9 436 aa9.75□□□□□ -0.85
USP3-208ENST00000558285 UMODL1Q5DID0 1318 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 IGKV6D-21A0A0A0MT36 114 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 SMIM35A0A1B0GVV1 85 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 MBLAC1A4D2B0 266 aaPredicted RBP9.74□□□□□ -0.85
USP3-208ENST00000558285 MSH4O15457 936 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 EPHB4P54760 987 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 MRPS6P82932 125 aaKnown RBP9.74□□□□□ -0.85
USP3-208ENST00000558285 PLCB4Q15147 1175 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 FAM26DQ5JW98 314 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 OTUD6AQ7L8S5 288 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 CCDC83Q8IWF9 413 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 DIS3L2Q8IYB7 885 aaKnown RBP9.74□□□□□ -0.85
USP3-208ENST00000558285 NEK9Q8TD19 979 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 RAB34Q9BZG1 259 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 GABBR1Q9UBS5 961 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 STXBP5LQ9Y2K9 1186 aa9.74□□□□□ -0.85
USP3-208ENST00000558285 H3BQV1 296 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 SOX1O00570 391 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 CHMP2AO43633 222 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 SEC24BO95487 1268 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 CTSHP09668 335 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 TRAPPC10P48553 1259 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 PSMC5P62195 406 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 TMEM266Q2M3C6 531 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 XKR3Q5GH77 459 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 PPP2R2DQ66LE6 453 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 KRT40Q6A162 431 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms