RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SUGP1Q8IWZ8 645 aaKnown RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 RDH13Q8NBN7 331 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 SCFD1Q8WVM8 642 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 ZKSCAN4Q969J2 545 aaPredicted RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 DNAJC19Q96DA6 116 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 MTMR9Q96QG7 549 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 MXD3Q9BW11 206 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 KLC4Q9NSK0 619 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 TMOD4Q9NZQ9 345 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 DDX25Q9UHL0 483 aaKnown RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 PPP1R11O60927 126 aaPredicted RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 EPB41P11171 864 aaKnown RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 POLD1P28340 1107 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 PRPHP41219 470 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 GNAQP50148 359 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 CPLX4Q7Z7G2 160 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 FLAD1Q8NFF5 587 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 MGARPQ8TDB4 240 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 HAS1Q92839 578 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 DNAJC17Q9NVM6 304 aaKnown RBP13.49□□□□□ -0.25
LDLR-205ENST00000557933 CEP72Q9P209 647 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 CD2APQ9Y5K6 639 aa13.49□□□□□ -0.25
LDLR-205ENST00000557933 LRRN2O75325 713 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 TRIM37O94972 964 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 KIF4AO95239 1232 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 FGGP02679 453 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 ADCY7P51828 1080 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 TNNC1P63316 161 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 ALKBH5Q6P6C2 394 aaKnown RBP13.48□□□□□ -0.25
LDLR-205ENST00000557933 PEX26Q7Z412 305 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 CCDC91Q7Z6B0 441 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 RAPGEF5Q92565 580 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 AKT1S1Q96B36 256 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 PCDHA12Q9UN75 941 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 LEMD3Q9Y2U8 911 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 GNPATO15228 680 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 PJA2O43164 708 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 LCA5LO95447 670 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 MYL1P05976 194 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 MYBP10242 640 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 PRLRP16471 622 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 SETQ01105 290 aaPredicted RBP13.48□□□□□ -0.25
LDLR-205ENST00000557933 DPP8Q6V1X1 898 aaPredicted RBP13.48□□□□□ -0.25
LDLR-205ENST00000557933 TMBIM4Q9HC24 238 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 EMILIN3Q9NT22 766 aa13.48□□□□□ -0.25
LDLR-205ENST00000557933 USP17L10C9JJH3 530 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 ZBTB39O15060 712 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 FAM107AO95990 144 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 AKR1B1P15121 316 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 SBK1Q52WX2 424 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 FAM133BQ5BKY9 247 aaKnown RBP13.47□□□□□ -0.25
LDLR-205ENST00000557933 OTUD6AQ7L8S5 288 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 PALB2Q86YC2 1186 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 GLYCTKQ8IVS8 523 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 CAND2O75155 1236 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 RDXP35241 583 aaKnown RBP13.47□□□□□ -0.25
LDLR-205ENST00000557933 PLTPP55058 493 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 LRRC63Q05C16 580 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 LRRC14Q15048 493 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 TRAPPC3LQ5T215 181 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 CPNE8Q86YQ8 564 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 PROM2Q8N271 834 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 CUEDC2Q9H467 287 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 HDAC9Q9UKV0 1011 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 SNX24Q9Y343 169 aa13.47□□□□□ -0.25
LDLR-205ENST00000557933 GMNCA6NCL1 334 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 LAD1O00515 517 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 PLA2G4BP0C869 781 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 PCP11498 1178 aaKnown RBP13.46□□□□□ -0.25
LDLR-205ENST00000557933 UCHL3P15374 230 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 CDR1P51861 262 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 CACNB3P54284 484 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 PNMA8AQ86V59 439 aaPredicted RBP13.46□□□□□ -0.25
LDLR-205ENST00000557933 TAX1BP1Q86VP1 789 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 CCDC25Q86WR0 208 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 TCP11Q8WWU5 503 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 N4BP2L2Q92802 583 aaPredicted RBP13.46□□□□□ -0.25
LDLR-205ENST00000557933 ARHGEF1Q92888 912 aaKnown RBP13.46□□□□□ -0.25
LDLR-205ENST00000557933 SEC16BQ96JE7 1060 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 SETDB2Q96T68 719 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 ERVK-5Q9HDB9 667 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 BAIAP2L1Q9UHR4 511 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 IGSF9BQ9UPX0 1349 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 LRRC37AA6NMS7 1700 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 SSU72P8A0A1W2PR75 194 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 SPDYE3A6NKU9 549 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 MED24O75448 989 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 KRT13P13646 458 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 ARHGAP44Q17R89 818 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 ZNF572Q7Z3I7 529 aaPredicted RBP13.46□□□□□ -0.25
LDLR-205ENST00000557933 DAGLBQ8NCG7 672 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 BMP2KQ9NSY1 1161 aaPredicted RBP13.46□□□□□ -0.25
LDLR-205ENST00000557933 NAGPAQ9UK23 515 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 PTPN22Q9Y2R2 807 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 PCDHGC5Q9Y5F6 944 aa13.46□□□□□ -0.25
LDLR-205ENST00000557933 RIMBP2O15034 1052 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 CTNND1O60716 968 aaKnown RBP13.46□□□□□ -0.26
LDLR-205ENST00000557933 SF3B3Q15393 1217 aaKnown RBP13.46□□□□□ -0.26
LDLR-205ENST00000557933 USH1GQ495M9 461 aa13.46□□□□□ -0.26
LDLR-205ENST00000557933 ZCWPW2Q504Y3 356 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms